New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4037450NA (NA)36 (0.270) 17/184 12.2 17.7% intergenic (+115/‑69) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
?NC_000913 = 4168568 180 (1.250)intergenic (+121/‑73) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttgttc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4037352‑4037450
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTTTCAC  <  NC_000913/4168568‑4168463
                                                                                                                                                                                                                 
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  2:188725/100‑1
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  1:446814/100‑1
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  1:391250/100‑1
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               >  1:1834728/1‑100
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  1:1870963/100‑1
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  1:3157870/100‑1
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTCAACAACGAAAG                                                                                                               >  2:1426869/1‑100
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACAGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAG                                                                                                               <  2:3223126/100‑1
 TAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGCAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGT                                                                                                              <  1:2707084/100‑1
 TAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGT                                                                                                              <  1:1299899/100‑1
 TAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGT                                                                                                              <  2:1124109/100‑1
  AAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTT                                                                                                             <  1:1183644/100‑1
  AAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTT                                                                                                             >  2:1375052/1‑100
  AAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTT                                                                                                             >  1:3524023/1‑100
  AAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTT                                                                                                             >  2:651150/1‑100
   AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG                                                                                                            >  2:219848/1‑100
   AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG                                                                                                            >  1:2026443/1‑100
    AAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT                                                                                                           <  1:2314049/100‑1
    AAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT                                                                                                           >  1:146157/1‑100
    AAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT                                                                                                           >  2:510935/1‑100
    AAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTCTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT                                                                                                           <  1:3261812/100‑1
     AAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTT                                                                                                          >  1:2928323/1‑100
     AAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTT                                                                                                          >  1:3229941/1‑100
                AGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC‑‑‑AGTGTTTC‑AA                                                                                           <  2:297237/100‑1
                 GTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AAT                                                                                          <  2:200863/100‑1
                  TGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAATATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCATTGTTC‑‑‑AGTGTTTC‑AATT                                                                                         <  2:3511857/100‑1
                  TGTACCTGCAAAGGTTCACTGCGAAGTTTTGATCTTTAAAAATCTGGATCTAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC‑‑‑AGTGTTTC‑AATT                                                                                         <  2:2362172/100‑1
                        TGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTTTCGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGC                                                                                   <  1:1510182/100‑1
                                      GCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTT                                                                     >  2:1526094/1‑100
                                                    TTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑GGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATAT                                                       >  2:1917203/1‑100
                                                     TTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTG‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATC                                                      >  1:3447062/1‑100
                                                     TTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAactt                                                      >  2:384167/1‑96
                                                           ATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTGTCTTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGTTCCAGATTTTTAAAGAGCAAATATCTCAAAC                                                <  1:2617871/100‑1
                                                                    AAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCAC                                           >  2:489167/1‑100
                                                                    AAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCAC                                           >  1:769486/1‑100
                                                                       CTGAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGA                                    >  1:2640884/1‑100
                                                                         GAAAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATG                                  >  1:812501/1‑100
                                                                           AAATTGAAACACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAG                                >  1:2264687/1‑100
                                                                           AAATTGAAACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAG                                >  1:1816573/1‑100
                                                                            AATTGAAACACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGT                               >  1:1443447/1‑100
                                                                            AATTGAAACACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGT                               >  1:1443606/1‑100
                                                                                GAAACACTGAACAACGAAAGTTGTTC‑‑‑‑GTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA                          >  2:2646502/1‑100
                                                                                 atctACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGCTTTTTAAAGAGCAAATATCTCTAACATCACCCGAAGATGAGTTTTGA                          <  1:3236299/96‑1
                                                                                 atctACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA                          <  2:1289514/96‑1
                                                                                 AAACACTCAACAACGAAAGTTGTTC‑‑‑AGTGGTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA                          <  2:3379023/100‑1
                                                                                  AACACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAG                         >  1:874112/1‑100
                                                                                  AACACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAG                         >  1:2963890/1‑100
                                                                                   ACACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGA                        >  1:3516505/1‑100
                                                                                    CACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGAT                       >  2:2393400/1‑100
                                                                                    CACTGAACAACGAAAGTTGTTC‑‑‑AGCGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGATTTGAGAT                       >  2:1222892/1‑100
                                                                                     ACTGAACAACGAGAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCGGAAGATGAGTTTTGAGATA                      >  2:3178244/1‑100
                                                                                     ACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCTGAAGATGAGTTTTGAagat                      >  2:3170647/1‑96
                                                                                     ACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAagat                      >  1:1311321/1‑96
                                                                                     ACTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATA                      >  1:664001/1‑100
                                                                                      CTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATAT                     >  2:952759/1‑100
                                                                                      CTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATAT                     >  2:2379437/1‑100
                                                                                      CTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATAT                     >  2:2292383/1‑100
                                                                                      CTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATAT                     >  1:746300/1‑100
                                                                                      CTGAACAACGAAAGTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATAT                     >  1:1882694/1‑100
                                                                                                   GTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGAC        <  1:125699/100‑1
                                                                                                     TGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTT      <  2:2781028/100‑1
                                                                                                     TGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTT      <  2:2780825/100‑1
                                                                                                     TGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTT      >  2:2384699/1‑100
                                                                                                     TGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTT      <  1:796268/100‑1
                                                                                                      GTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTTT     <  2:2040441/100‑1
                                                                                                        TC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTTTCA   >  1:1179612/1‑100
                                                                                                         C‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTTTCAC  >  2:2564746/1‑100
                                                                                                                                                                                                                 
ATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttgttc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4037352‑4037450
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGTTC‑‑‑AGTGTTTC‑AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGTCGGCGACTTTCAC  <  NC_000913/4168568‑4168463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.