Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,950,4490CA34.9% 174.1 / 151.9 146intergenic (+29/‑58)ilvL/ilvXilvG operon leader peptide/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (44/51);  new base A (27/24);  total (71/75)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 151 total aligned reads displayed.

GTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA  >  NC_000913/3950352‑3950546
                                                                                                 |                                                                                                 
gTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGc                                                                                                 >  1:3299331/1‑100 (MQ=255)
   gTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCAcc                                                                                              <  1:3355455/100‑1 (MQ=255)
   gTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCAcc                                                                                              <  1:2997424/100‑1 (MQ=255)
    tGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGATGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCg                                                                                             <  1:1055030/100‑1 (MQ=255)
      aTTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGaa                                                                                           <  1:2471510/100‑1 (MQ=255)
      aTTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGaa                                                                                           >  1:1658635/1‑100 (MQ=255)
       ttAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGaaa                                                                                          <  1:1452667/100‑1 (MQ=255)
       ttAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGaaa                                                                                          <  2:1519915/100‑1 (MQ=255)
        tAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAg                                                                                         <  2:1584046/100‑1 (MQ=255)
         aGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAgg                                                                                        <  2:1314101/100‑1 (MQ=255)
          gCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGt                                                                                       <  2:1907479/100‑1 (MQ=255)
          gCGTGGTGGTCATTATTATCCCACCGTGCGGGGCGGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACAAACTAAGACCCCCGCACCGAAAGGt                                                                                       >  2:3277533/1‑100 (MQ=255)
           tctggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTc                                                                                      <  1:2644327/98‑1 (MQ=255)
            gtggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTcc                                                                                     >  1:1574160/1‑100 (MQ=255)
             tggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCg                                                                                    >  1:473456/1‑100 (MQ=255)
              ggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCgg                                                                                   <  1:559921/100‑1 (MQ=255)
              ggtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCgg                                                                                   >  1:1946739/1‑100 (MQ=255)
               gtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCggg                                                                                  <  1:3439533/100‑1 (MQ=255)
               gtggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCggg                                                                                  >  1:2232586/1‑100 (MQ=255)
                 ggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCggggg                                                                                <  2:2512962/100‑1 (MQ=255)
                 ggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCggggg                                                                                >  1:1407948/1‑100 (MQ=255)
                    gATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGttt                                                                             >  2:405199/1‑100 (MQ=255)
                      ttattaTCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt                                                                           >  2:168551/1‑100 (MQ=255)
                        attagCCCGCCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGttttttt                                                                         <  2:2740720/100‑1 (MQ=255)
                         ttatCCCACCGTGTGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGtttttttt                                                                        >  1:893285/1‑100 (MQ=255)
                         ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                        <  1:221831/100‑1 (MQ=255)
                         ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                        >  1:1093185/1‑100 (MQ=255)
                         ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                        >  2:2738089/1‑100 (MQ=255)
                         ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                        >  1:1222356/1‑100 (MQ=255)
                         ttatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGgttttttt                                                                        >  1:991023/1‑100 (MQ=255)
                          tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTg                                                                       <  1:2375777/100‑1 (MQ=255)
                          tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTg                                                                       >  2:2580022/1‑100 (MQ=255)
                          tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTg                                                                       <  2:426674/100‑1 (MQ=255)
                           atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa                                                                      <  1:1858817/100‑1 (MQ=255)
                           atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGGTTTTTTTGa                                                                      >  2:1373028/1‑100 (MQ=255)
                            tCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                                                                     >  2:1476600/1‑100 (MQ=255)
                            tCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                                                                     <  1:468560/100‑1 (MQ=255)
                             cccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAcc                                                                    <  1:1548827/100‑1 (MQ=255)
                               cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGGTTTTTTTGACCtt                                                                  >  1:3489668/1‑100 (MQ=255)
                                 ccGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa                                                                >  2:2153620/1‑100 (MQ=255)
                                  cGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                                                               >  1:787739/1‑100 (MQ=255)
                                  cGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa                                                               <  1:1147501/100‑1 (MQ=255)
                                   gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa                                                              <  1:373637/100‑1 (MQ=255)
                                   gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACTGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa                                                              <  1:3218285/100‑1 (MQ=255)
                                   gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa                                                              <  1:399653/100‑1 (MQ=255)
                                    tGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa                                                             <  1:2130982/100‑1 (MQ=255)
                                      cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa                                                           <  2:788982/100‑1 (MQ=255)
                                        gggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa                                                         >  1:2014929/1‑100 (MQ=255)
                                            tGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGCCCTTAAAAATATAACCg                                                     >  1:3331923/1‑100 (MQ=255)
                                             gCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGGCCTTAAAAACCTAACCga                                                    >  1:950004/1‑100 (MQ=255)
                                              cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCgag                                                   >  1:201204/1‑100 (MQ=255)
                                                  tGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc                                               >  1:1187693/1‑100 (MQ=255)
                                                  tGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc                                               <  2:1202395/100‑1 (MQ=255)
                                                   ggACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTTAAAACATAACCGAGGAGCa                                              >  2:1189097/1‑100 (MQ=255)
                                                   ggACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa                                              <  1:3223125/100‑1 (MQ=255)
                                                    gACGAGGAAAGGCTTAGAGATCAAGCCTTCACGAACTAAGACCCCAGCACCGAAAGGTCAGGCGGTTTTTTTTGACCTTAAAAACATTACCGAGGAGCAg                                             >  2:1831054/1‑100 (MQ=255)
                                                    gACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAg                                             >  2:1302004/1‑100 (MQ=255)
                                                     aCGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGG‑TTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc                                           <  1:2335620/100‑1 (MQ=255)
                                                      cGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc                                           <  1:2096664/100‑1 (MQ=255)
                                                      cGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc                                           <  1:2333097/100‑1 (MQ=255)
                                                        aGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTTTCCTTAAAAACATAACCGCAGAGCAGACaa                                         >  2:2370962/1‑100 (MQ=255)
                                                         ggAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAt                                        <  1:1609299/100‑1 (MQ=255)
                                                          gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg                                       <  2:2891178/100‑1 (MQ=255)
                                                          gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGGTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg                                       <  2:971769/100‑1 (MQ=255)
                                                          gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg                                       >  2:2546441/1‑100 (MQ=255)
                                                           aaaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATgg                                      >  2:2524271/1‑99 (MQ=255)
                                                           aaaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAATAGCAGACAATGa                                      >  2:1814028/1‑100 (MQ=255)
                                                           aaaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGa                                      >  2:1842445/1‑100 (MQ=255)
                                                              ggCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACGATGAATa                                   >  2:1537728/1‑100 (MQ=255)
                                                              ggCTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATa                                   >  2:1907514/1‑100 (MQ=255)
                                                               gCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGATAATGAATaa                                  >  2:3186744/1‑100 (MQ=255)
                                                               gCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTCTTTTTTGACGTCCAACACATAACCGAGGAGGAGCCAATGAATaa                                  >  2:3466067/1‑100 (MQ=255)
                                                                cTTAGAGATCAAGCCTTAGCGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc                                 >  1:1985805/1‑100 (MQ=255)
                                                                cTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc                                 <  2:1484837/100‑1 (MQ=255)
                                                                cTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc                                 >  1:2818759/1‑100 (MQ=255)
                                                                cTTAGAGATCAAGCCTTAACGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc                                 <  1:2144680/100‑1 (MQ=255)
                                                                 ttAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa                                >  1:2985944/1‑100 (MQ=255)
                                                                  tAGAGATCAAGCCTTAACGAACTAAGACCCCCTCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAg                               <  2:523238/100‑1 (MQ=255)
                                                                   agagATCAGCCCTAAACAAACAAAAACCCCCGAACGAAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAgn                              <  1:2893243/100‑2 (MQ=255)
                                                                    gaggTCAAGCCTTAACGAGCTAAGACCCGCGGACCGAAAGGTCCGGGGGTTTTTTTTGACTTTAAGAACATAACCGTGGAGCAGACAATGAATAACAGca                             <  2:2979491/100‑1 (MQ=255)
                                                                    gagaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGca                             <  2:1029610/100‑1 (MQ=255)
                                                                      gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcaca                           >  2:2066004/1‑100 (MQ=255)
                                                                               ttAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAACTTAAAAACATAACAGAGGGGCAGACAATGAATAACAGCACAAAAATATGt                  >  2:1578434/1‑100 (MQ=255)
                                                                               ttAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGCTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGTACAAAATTCTGt                  <  2:3421165/100‑1 (MQ=255)
                                                                                tAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt                 <  2:672796/100‑1 (MQ=255)
                                                                                tAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt                 <  2:3160680/100‑1 (MQ=255)
                                                                                tAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGGTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt                 >  1:417063/1‑100 (MQ=255)
                                                                                   cGAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATCACAGCACACAATTCTGTTtcc              >  2:2080584/1‑99 (MQ=255)
                                                                                    gAACTAAGACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTTTTTTTTTTTTCATAACCGAGGAGCAGACAATGAATAACAGCACAAAGTTCTGTTtctc             >  2:1868836/1‑100 (MQ=255)
                                                                                     aaCTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCa            <  1:1033588/100‑1 (MQ=255)
                                                                                     aaCTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCa            >  1:414948/1‑100 (MQ=255)
                                                                                       cTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAg          >  2:2884678/1‑100 (MQ=255)
                                                                                        tAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAgn         <  1:2893160/100‑2 (MQ=255)
                                                                                         aaGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAt        <  1:3493785/100‑1 (MQ=255)
                                                                                         aaGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAt        <  1:1869672/100‑1 (MQ=255)
                                                                                         aaGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAt        >  2:1381775/1‑100 (MQ=255)
                                                                                           gACCCCAGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTc      >  1:510332/1‑100 (MQ=255)
                                                                                             ccccaGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAg    >  2:1724183/1‑100 (MQ=255)
                                                                                              ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAgg   <  1:2095641/100‑1 (MQ=255)
                                                                                               cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAAACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa  >  2:749221/1‑100 (MQ=255)
                                                                                                 |                                                                                                 
GTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGA  >  NC_000913/3950352‑3950546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑