mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4515759 = | 117 (0.840) | 3 (0.020) | 3/540 | NT | 2.6% | coding (919/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | 4515778 = | 107 (0.780) | coding (900/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| * | ? | NC_000913 | 4409174 = | NA (NA) | 5 (0.040) | 5/518 | NT | 4.9% | noncoding (22/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4409235 = | 98 (0.750) | noncoding (83/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4392514 | 106 (0.760) | 3 (0.020) | 3/532 | NT | 3.0% | noncoding (43/76 nt) | glyX | tRNA‑Gly |
| ? | NC_000913 | = 4392608 | 89 (0.660) | noncoding (26/76 nt) | glyY | tRNA‑Gly | |||||
| * | ? | NC_000913 | 3927418 = | 116 (0.840) | 3 (0.020) | 3/524 | NT | 2.7% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3927457 = | 107 (0.810) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | = 3675014 | 145 (1.050) | 3 (0.020) | 3/538 | NT | 2.3% | coding (229/1323 nt) | yhjE | putative MFS transporter; membrane protein |
| ? | NC_000913 | = 3675218 | 107 (0.790) | coding (433/1323 nt) | yhjE | putative MFS transporter; membrane protein | |||||
| * | ? | NC_000913 | 3037292 = | 155 (1.120) | 3 (0.020) | 3/534 | NT | 2.2% | coding (815/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913 | 3037622 = | 119 (0.880) | coding (485/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | NC_000913 | = 2907997 | 138 (1.000) | 3 (0.020) | 3/524 | NT | 2.2% | intergenic (‑56/+32) | eno/pyrG | enolase/CTP synthetase |
| ? | NC_000913 | = 2907998 | 139 (1.050) | intergenic (‑57/+31) | eno/pyrG | enolase/CTP synthetase | |||||
| * | ? | NC_000913 | = 2756112 | 137 (0.990) | 3 (0.020) | 3/526 | NT | 2.1% | intergenic (+734/‑47) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| ? | NC_000913 | = 2756129 | 142 (1.070) | intergenic (+751/‑30) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | NC_000913 | = 2713829 | 133 (0.960) | 5 (0.040) | 3/526 | NT | 3.7% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 131 (0.980) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2331858 | 129 (0.930) | 4 (0.030) | 4/532 | NT | 3.1% | pseudogene (2545/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | = 2331859 | 127 (0.940) | pseudogene (2544/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||