| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,667 | 0 | G | A | 33.3% | 62.4 / 19.6 | 54 | pseudogene (937/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base G (26/10); new base A (0/18); total (26/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATG > NC_000913/3862430‑3862902 | tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTGCGGGa > 1:48787/1‑239 (MQ=255)tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑AGGTAATTCCCACCAGCATGGCGGGTT‑AA‑GG‑TGCgggg > 1:926614/1‑238 (MQ=255)tGGAGATTTGTGGCAGCTTCATATCCGCGTGGTTGCTGAACATCGGGTTCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCGCCGCCCAGGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGa < 2:1259094/239‑1 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGCGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑CT‑CGGTAATTCCCACCAGCATGGC‑GGCT‑AA‑AGTTGCggggaacc > 1:719433/1‑233 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGGTGCGGGAAACAGC‑AAGCCCGCCA‑CCTTTACCCg > 1:1805086/1‑239 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGTTGCGGGAAAAAGC‑AAGACCCCCA‑CCTTTAtccc > 2:2506911/1‑238 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGCGGGTT‑AA‑GGTTGGGGGAACAGGC‑AAACCCGCCC‑CTTTTTccga > 1:2765707/1‑237 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGTTACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGCT‑AA‑AGTTTCGGGAAACACG‑AAGCCCCCCACCTTTTAccgcatt > 1:89577/1‑233 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTTAAA‑GGTTG‑GGGGATCAACAAACCCCCCCC‑CTTTTCCCCGTTTTTCCGGGGGGGc > 1:692300/1‑239 (MQ=255) cggtgtCCAGTTTTGCAGTAAAA‑CAGAGCCAGACAGACCTCCGCCCATCGTC‑CCCCCCACCCAAAAGAAATAC‑TTACGGGTCGA‑AATTGGGGCCGCCAGCAGGGCGTGTACCCAAAAAAGAAACG‑GGGAAAAGAACA‑GAAAGGAAAATCCCGGCGT‑TT‑CGTTAATCCCCACCAGCAGGGG‑GTTT‑AG‑GTTTGGGGAAATCAAC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCa < 2:1308690/233‑1 (MQ=255) aGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTGGGGGGAACAGC‑AAAACCCCCC‑CTTTTTCCCGCTTTTTCCGGGCGGGAGGGaacaaa > 1:2434753/1‑235 (MQ=255) tttGCAGTAAAACCCTGTTCAACAAGCCCCCCG‑CCATGGTGCCCCACCCCACAAAAGAGATAAATT‑C‑GGGCGACCATGGAGGCCGCAAGCAGGGGGTCTACCGAAAACAGAAAGG‑GAAAAATGAACA‑GGAAGGT‑AATTCCCGGGG‑TTGCGGTAACCCCCCCCACCAGGGG‑GGTA‑AG‑GGTGGCGGAATTCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTa < 2:1600021/236‑1 (MQ=255) ggtGCGGTAAAA‑CCTACACAATCAGCCCACGGCCCGGGCAC‑CCCACCACACAGAAGGCTTCCACTCG‑GGCCGC‑CATGGGGCCCGCAAGCAGGGCGTGTCCCACAACCGGCAAGG‑GTAAAATGAAAA‑GGAAGGTAAATCCCAGGGT‑TT‑GGGTAATCCCCCCCAGCCTGGC‑GTTT‑AG‑GGTGGGGGAAATCAGC‑AAACCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTa < 2:692300/233‑1 (MQ=255) tGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GGGTGCGGGAATCAAC‑AAACCCCCCA‑CTTTTTCCCGATTTTTCCGTGCGGCAGTggaaaaaaac > 1:340525/1‑228 (MQ=255) aaaa‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGCGGGTT‑AG‑GGTTCGGGGaacaaac > 2:1168283/1‑179 (MQ=255) tCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑GGTTGCGGGGATCAGC‑AAGCCCCCCC‑CCTTTTTCCGCGTTTTCGGTGCGGCCGGGAAGGAAAATCGCCAAAGAAATAccccggg > 2:135909/1‑234 (MQ=255) gcagccTCCGCCCATGTCG‑CCCCCCACGCACAAGAGATAGACCAC‑GGTCAG‑AATTGGGCCCCACGACCCGGGGGGCCCCAAAAACGCGAACG‑GAAAAAAGAACA‑GGAAGATAATCCCCAGCGG‑TA‑CGGAAATCCCCACCAGCAGGCC‑GGTT‑GA‑GGTTGCGGAAATCGGC‑ATGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACgg < 2:2315545/232‑1 (MQ=255) ccacaccaAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGTTGCGGGGATACGC‑AAACCCCCCA‑CTTTTACACCACTTTTCGGTGCCGCAGTGAA‑GTACAACTCTCAAAAAAAAGCCACGGCA‑GCCAAAACTTTTGTGTTatcatgt > 2:1829381/1‑233 (MQ=255) tCGA‑CGTTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AAGGGTTGGGGGAA‑AAGCAAACCCCCCCC‑CTTTTACCCCATTTTCCGG‑GGGGCCGGGAAGGAAAACCGCT‑AAGAAAAGCCCCCGGCACCCAAAGATTTTTAGGTTACGGGCCA‑GGGCAAAACCCCATCCCGGGaa > 2:1725538/1‑239 (MQ=255) a‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGGTGCGGGAATCCGC‑AAGCCCGCCC‑CTTTTACCCCGTTTTTCGGTGCGGGAGTGGA‑AGACATCGCTAAAGAAAAGCCCCCGGCC‑CCCAAGAATTTTTAGTTTACCTGCACGGGAAAAACCCCCTCCCGGGaacac > 2:463228/1‑238 (MQ=255) gcagcccgccAGCGGGGCGGGTACCGCAAA‑AACAACGTGTAAGATAACAA‑AGATGATACCTCCCGGCGG‑TT‑GGTCAATCCCCACCAGCAGGGC‑GGTT‑AA‑GGTTGCGGGAAACAGC‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTGAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGaac < 2:2765707/227‑1 (MQ=255) ggCTTGAACCGAAAACAAAAACG‑GT‑AAAAGAACAGGGATGGAAAATGCCAGCGG‑TT‑CAGTAATCCCCACCAGCATGGG‑GGTT‑AG‑GGTGGGGGAAAACAAA‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGgcgc < 2:463885/239‑1 (MQ=255) cGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTG‑AA‑GGTTGGGGGGATCAAC‑AAACCCGCCC‑CTTTTTTCCGAATTTCCGGGGCGGCAGTGGA‑AAACATCCCTAAAGAAAAGCACACGGCA‑CCCAAGAATTTTTAGTTAACCGGGA‑GGGCGAAACAGCCCTACGCGGACAACGATATTCA‑CGGCTCCgcgcgc > 2:2500554/1‑237 (MQ=255) cGCAAACAGAAACG‑GTAAAAGAAAGA‑GGAAGTAAAATCCCAGCGG‑TT‑CGGTAATCCCCCCCAGCATGGG‑GGTT‑AG‑GGTGGCGGAAATCAGC‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCa < 2:544234/127‑1 (MQ=255) cGCAAACAACAACG‑GTAAAAAGAACA‑GGAAGGAAATTCCCAGCGG‑TT‑CGGAAATCCCCCCCAGCAGGGC‑GGTT‑AG‑GGTTGCGGAAATCAGA‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGa < 1:463228/239‑1 (MQ=255) aaaaaCAGCACGG‑GAAAAAGGAACG‑GGAAGTAAAATCCCGGGGT‑TT‑CGGAAATTCCCACCAGCTTGGG‑GTTG‑AA‑GGTGGGGGGAATCAAC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGaa < 1:2500554/237‑1 (MQ=255) aaaCAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTGGGGGGATCACG‑AAGCCCCCCA‑CTTTTACCCCATTTTTCGGTGCGGGAGTGAA‑GGACATCGCTAAAGAAAAGCCCACGCGA‑CCCAAGAATTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCCGGAACAAAGAT‑TTCTGCGCGGCGGCGCTCACACAGAAc > 2:525475/1‑238 (MQ=255) aCAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGGTGCGGGAAACAGC‑AAGCCCGCCC‑CCTTTACCCGATTTTTCCGGGCGGCGGTGGA‑GGACATAGCTAAAAAAATACCCACGGCC‑CCCAAGATTTTTGAGTTACCGTGCA‑GGGCGAAAACGCCTTCCCGGAACAAACAT‑TTCCTCGGGTCGGCGCTCACACAGacaac > 2:2502053/1‑234 (MQ=255) aaCG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGTTGCGGGGATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTTCGGGGCGGGAGTGAA‑GTACa > 1:544234/1‑127 (MQ=255) aaCG‑GAGAAAGGAACA‑GGAAGGAAAATCCCGGGGT‑TT‑CGATAATCCCCACCAGCATGGC‑GGTT‑AA‑GGTGGCGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAg < 1:1090756/239‑1 (MQ=255) ggaaaaagaaaa‑gGAAGAAAAATTCCGGCGG‑TT‑GGTTAATCCCCACCAGCAGGGG‑GGTT‑AA‑GGTTGGGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAg < 1:27383/232‑1 (MQ=255) aaaaTGAACG‑GGAAGGGAAATCCCAGCGG‑TT‑GGGTAATTCCCCCCAGCGGGGC‑GGTA‑AA‑GGTGGCGGGAATCAGA‑AGGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 1:124248/237‑1 (MQ=255) tGACCA‑GAAAGGAAAATCCCAGCGG‑TG‑CGGTAATCCCCACCAGCTTGGC‑GGTT‑AG‑GGTAGCGGAAAGCAGA‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1061147/239‑1 (MQ=255) tGAAGA‑GGAAGAAAATTCCCGGCGT‑TT‑CGGTAATCCCCACCAGCAGGGC‑GGTT‑AG‑GGTTGGGGAAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:2242422/239‑1 (MQ=255) aaaa‑GGAAGTAAAATTCCGGCGT‑TT‑CGGTAATCCCCCCCAGCAGGGC‑GGTT‑AG‑GGTTGGGGGAACCAGC‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:2040202/234‑1 (MQ=255) gagggTAAATTCCAGGGG‑TA‑CGGTAATTCCCACCAGCTGGGG‑GGTT‑AG‑GGTGGGGGGAACAAGA‑AGGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:2738873/229‑1 (MQ=255) gaGGTAAAATCCCGGGGTTT‑CGTTAATCCCCCCCAGCGGGGC‑GGTT‑AG‑GGTGGGGGAAACCAAC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGaa < 1:1626033/212‑1 (MQ=255) aaGGTAATTCCCAGCGG‑TT‑CGGTAATCCCCCCCAGCGTGGC‑GGTT‑AG‑GGTGGCGGAAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1834308/231‑1 (MQ=255) aaGGTAAATCCCGGGGT‑TT‑CGGTAACTCCCCCCAGCATGGG‑GTTG‑AA‑GGTGGGGGAAACCAGC‑ACGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:2021630/234‑1 (MQ=255) tAAATCCCAGCGG‑TC‑CGTTAATTCCCCCCAGCAGGGC‑GTTT‑AA‑GGTGGGGGAAATAAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:2649972/230‑1 (MQ=255) aaTTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GGGTTTGGGAATCAAA‑AAAATCCCCA‑ATTTTTACCGCTTTTCCg > 1:920188/1‑85 (MQ=255) tCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGGATCAGC‑AAGCCCGCCC‑CTTTTACCCGGTTTTTCGGGGCGGCAGTGAA‑GGACATCGCTAAAGAAATGcc > 1:584809/1‑116 (MQ=255) gCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGGATCAGC‑AAACCCGCCC‑CTTTTACCCGGTTTTTCGGTGCGGCAGGGAA‑GTACATCGCTAAAAAAAAGCCCACGGCA‑CCAAAGATTTTTGa > 1:895088/1‑133 (MQ=255) ccgtaaTGGG‑GGTT‑AA‑GTTTGCGGAAATCGAA‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:1866628/234‑1 (MQ=255) ccaGGAGGGC‑GGTT‑AA‑GGTTGCGGAAACCAGC‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 2:1742183/239‑1 (MQ=255) ccaGCAGGGC‑GGTT‑AA‑GGTGGGGGGAACCAGA‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:135909/239‑1 (MQ=255) ggtggTT‑AA‑GGTGGCGGAAAGCAGC‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATa < 1:2080204/235‑1 (MQ=255) ggTT‑AATGGTGGCGGAAAGCAGA‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:2614236/238‑1 (MQ=255) aaa‑GGTGGCGAAAATCACA‑AACCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTc < 1:2095503/238‑1 (MQ=255) gCGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGaa > 1:367584/1‑69 (MQ=255) cGGGTATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GCACACCGCTAAAGAAATGCCCAAGGCA‑CGAAAGATTTTTGAGTTAACGTGTA‑GGGCCAAACCGCCTACCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCCAACTGAAATCTTGCAGATGCTGCCTCCAGGACACTTGACTGCCGCCTTCCACAGCTGGCGGACCAAAGCTAACCTGTCCGtt > 2:984561/1‑234 (MQ=255) cGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAAct < 1:848666/162‑1 (MQ=255) cGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAAct > 2:848666/1‑162 (MQ=255) cGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATg > 1:2096498/1‑239 (MQ=255) cGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATg > 1:784119/1‑239 (MQ=255) cGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACACCGCTAAAGAAATACCCACGGCA‑CCAAAGATTTTTGAGGTACCGCGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACAACCGAAAGCCGCCTTCAAAAGCTCACAGGCACAAGCAAAACTGTACGTAGaat > 2:709623/1‑237 (MQ=255) | TGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAA‑CCTAGTCAATCAGACCTCCGCCCATGTTG‑CCCACCACACCAAAGAGATACATTAC‑GGTCGA‑CATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACG‑GTGAAATGAACA‑GGAAGGTAAATTCCAGCGG‑TT‑CGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGAATCAGC‑AAGCCCGCCA‑CTTTTACCCGATTTTCCGGTGCGGCAGTGAA‑GTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCA‑GGGCAAAACCGCCTTCCGGGAACAACGAT‑TTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATG > NC_000913/3862430‑3862902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |