New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2518117263 (1.070)10 (0.050)
+TAACATGTAGTTAAAACCTCTT		 6/290 12.5 4.2% intergenic (‑1/+39) alaX/alaW tRNA‑Ala/tRNA‑Ala
?NC_000913 = 3427077 NA (NA)noncoding (76/77 nt) ileU tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTT  >  NC_000913/3426929‑3427163
                                                                                                                                                    |                                                                                      
tagaattattTATTTAATCACTACCGAGATGGCGGAGTTATGCGGTATCGAACCCCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATCACATGTAGTTAAAACCTCTTCAAATTTTCCGCGTAAATCTGGTAGGCCTGAGTGGACTTTAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTAAGCTACAAGACTGTACAgggtat  >  2:2103521/5‑231 (MQ=1)
                                                                                                                                                    |                                                                                      
AAGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTT  >  NC_000913/3426929‑3427163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.