| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,662 | 0 | T | G | 35.5% | 60.2 / 13.7 | 62 | pseudogene (942/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (28/12); new base G (2/20); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.42e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862428‑3862889 | aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑AT‑AGTTgggg > 1:2184545/1‑239 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑AGGTGCgggg > 1:1085342/1‑238 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGGTGCgggg > 1:3493366/1‑238 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTA‑AA‑GGTGGGGGGaaca > 1:1975488/1‑236 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTG‑AA‑GGGTGCggggagta > 1:2886037/1‑233 (MQ=255) gTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGAT‑AA‑GGGTTCGGGGATcaa‑c‑aaag > 1:3426405/1‑236 (MQ=255) catcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑TA‑AGTTGGGGGGAACAA‑C‑AAACCCGcc > 1:1924177/1‑238 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTTCGGGGAACAG‑C‑AATCCCCCCACATTTTCCCGa > 1:800336/1‑239 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTGCGGGGAACAA‑CAAAACCCCCCCTTTTTCCCCGCTTTTCCgtgg > 1:3400569/1‑236 (MQ=255) ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAA‑GGTGGGGGGACAAAC‑A‑AAGCCCCCCCCTTTTCCCCATTTTTCCCGTGGGGCAG‑GGAGTAC‑a > 1:1114516/1‑238 (MQ=255) tgtggggacaaaaCCTAATAAACCAGCCCTCCGCGCGTGCTCCCCCCCACAAAAAAGAAATACACTACGCGCGAAAGGGAGCCCCCCAACACGGCGTGCACCGAAAACGGCAGCGGTAAAT‑GGAACAGGAGGTTAAATTCAAGAGTTTCGGTAATCCCCACTGGGGGGGT‑GTTT‑AA‑GGTGGGGGGAATAAC‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑At < 2:2468702/230‑1 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GAGTTTGGGAAGAAG‑C‑ACACCCCCCACTTTTAACCCCTTTTTCGGTGCGGCAGAGAAGGAC‑Atag > 2:1769382/1‑236 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTT‑AA‑GG‑TGCGGGGAACCG‑C‑AAACCCCCCACcttttc > 1:3425762/1‑201 (MQ=255) gTCAATCACCCCCCCGCCTATGTCGCCCCCCCCACAAAAGATATACATCCGGCTCAACATTGGGCCCGCCAGCACGGCGTGTCCCAAAAACAGAAGCGGAGAAA‑TGAACGGGAAGGTAAATTCCGGGGGTTCGTTAACCCCCCCCAGCATGGC‑GGTA‑AA‑GGTGGCGGAAAACAC‑C‑AACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCa < 2:500802/239‑1 (MQ=255) cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GGTTTCGGGAATCAG‑A‑CAACCCGCCCCCTTTATCCGCTTTTCCCGTGCGGGCGGGAAGGAA‑AACGCTTAAAAAAAG‑CCCCCCCCACCAAAGC‑ATTTTTAG‑TTA‑CCCTGCa > 2:1174966/1‑239 (MQ=255) caccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGGTGGGGGGATCAG‑C‑AAAACCCCCCCCTTTACCCGATTTTTCCGAGCGGCAGGGAAGTACAATGGCCAAAAAAATC‑CCCACGCCCCACAAAA‑TTTTTAGT‑TTA‑CCG‑GCAgg > 2:1227261/1‑239 (MQ=255) accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGc > 2:3079785/1‑132 (MQ=255) accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGc < 1:3079785/132‑1 (MQ=255) tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCCAACAGCAACGGCGAAA‑TGAACAGGAAGGCAAATTCCAGCGGTTCTGTAATTCCCACCAGCATGGC‑GGTT‑AA‑TGTTTCGGGGATCTGAC‑AACCCGCCCCCTTTTACCC‑ATTTTCCGGGGCGGGCGGGAAGGAA‑CTCACTCAAAAAAAA‑ACCCCCGCGCCCATAA‑CTTTTTAG‑TTATCCGTGCTGGGCaaaagacg > 2:1054440/1‑235 (MQ=255) cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGGTGCGGGAAACAA‑C‑AAGACCGCCCCCTTTACCCCGTTTTTCCGTGCGGCCGGGAAGAAC‑AACGCGAAAGAAAAA‑CCCACGGCACCAAAAA‑ATTTTTAGTTTA‑CCG‑GCACGGCAAAAcaaccc > 2:1794272/1‑233 (MQ=255) tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGTTTCGGGGAACAG‑C‑AAAACCCCCCCCTTTAACCGCTTTTTCGGGGCGGCAGTGGAgga > 1:2519771/1‑164 (MQ=255) aCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GGTTGGGGGGATTAG‑C‑CAGCCCGGCACtttttc > 1:2443745/1‑134 (MQ=255) aCATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGGAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTT‑AA‑GG‑TGCGGGGAACAA‑CAAAACCCCCCCCTTTTACCCGGTTTTCCGG‑GCGGGCGGGAAGGAA‑ACACCCAAAAAAAAG‑CCCCCCGCCCCAAAAATTTTTTGGG‑TTC‑CCGCG‑AGGGCAAAAACG‑CCTTCCGGGgaccac > 2:1757724/1‑239 (MQ=255) aGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGTTGCGGGGATCAA‑C‑CAACCCCCCCCCTTTTCCCCCTTTTTCGGTGGGGCCGGGAAAGAA‑AACGCTAAAAAAAAA‑CCCCCCGCCCCCAAAA‑TTTTTTAA‑GTT‑TCGTGGCGGGCAAAAACG‑CCCTCCTGGgacaaccaattt > 2:2846435/1‑233 (MQ=255) gtgtctACCGCAAACACCCAGGGTAAAA‑TAAAAGGGAAGGTAAATCCCGGGGTTTCGGTAATTCCCACCGCCAGGGC‑GGTT‑GG‑GGTGGGGGGAATCAG‑A‑AAACCCGCCACTATTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCAc < 2:368282/159‑1 (MQ=255) aCCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑TA‑GGGTGCGGGGAACAA‑CAAACCCCCCCCCTTTTACCCCTTTTTCCGGGGGGGCGGGGAGAAAA‑ACCCCAAAAAAAATC‑CCCCCGCACCCAAAAA‑TTTTTGGG‑TTA‑‑CGCGCAGGGGAAAAACC‑CCCTCCCGGGACAAAGCTTTCTCCGGCTCGgcgccccaaa > 2:1133718/1‑232 (MQ=255) gaaaaCAGCAA‑GGTGAAAGTGAAAGGGAGGGTAACTCCCGGGGGTGCGGAAACCCCCCCAGGCTGGGG‑GGTT‑AG‑GGGTGGGGGAATCAC‑C‑ACGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 2:1089777/237‑1 (MQ=255) cAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑AGGTGCGGGAATTAG‑C‑CAACCCGCCACTTTTACCCGATTTTCCCGTGCGGCAGTGAAAGAA‑ATCGCTAAAGAAAAGCCCCCCGGCCCCaaa > 1:368282/1‑164 (MQ=255) aCAGAAACGGTAAAA‑TGAACAGGAAGGAAAATCCCAGGGGTTCGGTAATCCCCACCAGCAGGGG‑GTTT‑AG‑GGTTGGGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTg < 1:2331164/117‑1 (MQ=255) aaaaaCGGTAAAA‑TGAACGGGAAGTTAATTCCCGGCGGTTCGGTATTCCCCACCAGCTGGGC‑GTTT‑AG‑GGTTGGGAAAAAAAC‑A‑AACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCg < 1:437563/211‑1 (MQ=255) aGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTg < 1:2384981/73‑1 (MQ=255) aaCGGGGAAA‑TGAACAGGAAGGAAATTCCCGGCGTTTCGTTAATCCCCACCAGCATGGC‑GGTT‑AG‑GGTGGGGGGAACCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCg < 1:2453067/216‑1 (MQ=255) ggaaaa‑aGAACAGAAAGTAAAATCCCAGGGGTCCGGTAATCCCCACCACCGGGGG‑GGTA‑AG‑GGTGGGGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg < 1:1047547/235‑1 (MQ=255) gTGAAA‑TGAACAGGAGAGTAAATGCCAGGGTTTCGGTAACCCCCACGGGCAGGGG‑GTTT‑AA‑GGTGGGGGAAATCAG‑C‑AGGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg < 2:279067/238‑1 (MQ=255) tGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑AA‑AGGTTCGGGGATCAG‑C‑AAACCCCCCACCTTTTCCCCATTTTTCCGTGCGGGAGGGaa > 2:2331164/1‑117 (MQ=255) aaa‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑AGTTGCGGGGATCAG‑C‑AAGCCCCCCCCTTTTTCCCCATTTTTCGGTGCGGCAGTGAAGTAC‑ATCGCTTAAGAAATG‑CCCACGGCACCAAAGA‑tttttta > 1:640393/1‑155 (MQ=255) aaa‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGT‑TA‑GGGTGGGGGGATCAg > 2:2384981/1‑73 (MQ=255) aaa‑TGAACAGGAAGGAAAATCCCGGGGTTTGGTTAATCCCCCCCAGCAGGGC‑GTTT‑AG‑GGTGGGGGAAACCGG‑C‑AGGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg < 1:2194497/235‑1 (MQ=255) aa‑TGAACAGGAAGGAAATTCCCGGGGGTTCGGTATTCCCCCCCAGCATGGG‑GGTT‑AG‑GGTGGGGGAAATCAG‑C‑AACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:153194/239‑1 (MQ=255) tGAAAAGGAAGGAAAATTCCGGCGTTTCGTTAATCCCCCCCAGCAGGGC‑GGTT‑AG‑GGTGGGGGAAATAAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1133718/239‑1 (MQ=255) aaaagggAAGTTAAATCCCAGCGGTTCGTAAATTCCCCCCATGAGGGC‑GGTT‑AA‑GGTTGCGGGAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGccc < 1:2376252/234‑1 (MQ=255) aaCAGGAAGTTAAATTCCGGCGGTTGGGTAATCCCCCCCAGCAGGGC‑GTTT‑AG‑GGTGGGGGAAACCAC‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGAt < 1:1279858/192‑1 (MQ=255) aGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGa < 1:1843742/56‑1 (MQ=255) ggaaaaTCCCAGGGTTTCGTTAATCCCCCCCAGCAGGGG‑GGTT‑AA‑GGTGGGGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGAttt < 1:3561767/82‑1 (MQ=255) gaaaaTCCCGGCGTTTCGTTATTCCCCCCCAGCTTGGC‑GTTT‑AA‑GGTTGCGGAAAACAG‑A‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1769382/226‑1 (MQ=255) tAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TA‑GGTTGCGGGGGACAG‑G‑AAGGCCGCCACTTTTTCCCCATTTTTCGGTGCGGCAGGGGAGGAC‑ATCCCCAAAGAAATG‑CCCACGGCACCCAAGA‑ATTTTTAG‑TTA‑CCGTGCAGGGCAAAACCGCCCTTCCGGGAACAA‑GATTTTAGCgggc > 2:1279858/1‑190 (MQ=255) aaaaCTCCGGCGGTTGAGTAATCCCCGCAAGCGTGGG‑GTTT‑GA‑GTTGGGGGAAACCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:1975488/226‑1 (MQ=255) ttCGGTAATCCCCACCAGCGTGGC‑GGTT‑AA‑GGTGGCGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAAct < 1:566194/197‑1 (MQ=255) aactcccccccAGCATGGC‑GGTT‑AA‑GGTTGCGGAAATCAG‑C‑ACGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAg < 2:2023933/120‑1 (MQ=255) atccccACCAGCATGGC‑GGTT‑AA‑GGTGGCGGGAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGc < 1:1174966/236‑1 (MQ=255) tcccccccGGCAGGGC‑GTTT‑AA‑GGTGGGGGGAACCAG‑A‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAAt < 1:1717048/95‑1 (MQ=255) caccaGCGGGGC‑GGTA‑AA‑TGTGGCGGAAATCAG‑C‑AGGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:1237659/239‑1 (MQ=255) caccaGCAGGGG‑GGTT‑AA‑GGGGGGGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:884707/239‑1 (MQ=255) cccaGCTGGGC‑GGTT‑AA‑GTTTGGGGAAAACAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:2738076/198‑1 (MQ=255) cccaGCA‑GGG‑GGTT‑AAGGGTTGCGGAAACCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCt < 1:138546/172‑1 (MQ=255) ccaGCTGGGC‑GGTT‑AG‑GTTGGCGGGAATAAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:3468314/239‑1 (MQ=255) ccaGAAGGGC‑GGTG‑AG‑GGTGGCGGAAACCAA‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:2199944/239‑1 (MQ=255) caGCATGGC‑GGTT‑AA‑GGGTGCGGGGATCAG‑C‑AAACCCCCCCCTTTTTCCCGCTTTTCCCGTGCGGCCGGGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTTAG‑GTT‑CCGCGCAGGGCAAAACCC‑CCTTCCGGGGACAACGATTTTTGCCGCTCCGCCGTCCACCCGCACTCTTGCTGAAGACGCGCCCAGTACCTATCACTGCCCCCCTCTACAGCTccccggcaca > 2:2199944/1‑232 (MQ=255) cATGGC‑GGTT‑AA‑GGTTGCGGGGATCAG‑C‑AAGCCCCCCCCTTTTTCCCGATTTTCCGGGGCGGGAGGGGAGGAC‑a > 1:3029603/1‑74 (MQ=255) cATGGC‑GGTT‑AA‑GGTGGGGGAAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCgg < 1:448399/57‑1 (MQ=255) c‑GGTT‑TA‑GGGTGCGGGAATCAG‑C‑AAGCCCGCCCCTTTTTCCCCATTTTTCCGGGCGGCAGTGGAGGAC‑ATCGCTTAAGAAATG‑CCCCCGGCACCCAAAA‑TTTTTTAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTTAGCGGCTCCGCGGTCCAAACGAAc > 2:138546/1‑173 (MQ=255) ggttt‑AA‑GGTTGCGGAAACCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:2142843/235‑1 (MQ=255) ttGCGGGAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCa > 1:2078901/1‑86 (MQ=255) | AATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAA‑TGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑AA‑GGTTGCGGGAATCAG‑C‑AAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTAC‑ATCGCTAAAGAAATG‑CCCACGGCACCAAAGA‑TTTTTGAG‑TTA‑CCGTGCAGGGCAAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862428‑3862889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |