New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42962801 (0.010)36 (0.340)
+CTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCG		 8/116 14.6 98.4% noncoding (446/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 = 4296433 NA (NA)noncoding (599/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
Rejected: Coverage evenness skew score above cutoff.

ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4296200‑4296280
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG  <  NC_000913/4296433‑4296399
                                                                                 |||||||||||||||||||||||||||||||||||||||||                                   
ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTATGCCGCGTCCGACCTACAAAATCACGTTAAAT                                                           >  1:2492834/1‑100
                                     GCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGAC                      >  1:4413915/1‑100
                                       GTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGC                    >  2:1536806/1‑100
                                          ATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGtt                 >  1:3818962/1‑98
                                            TTTATAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAA               >  2:4113662/1‑100
                                               GTAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCG            >  2:1502536/1‑100
                                                TAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGT           >  1:2336040/1‑100
                                                TAGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCACGCTACTGCGCTGTCTGGCGTAGGCCTGGTAAGACGCGTTAAGCGT           >  2:1002510/1‑100
                                                 AGGTCGGATAAGGGGTTTATGCCGCATCCGAGCTACAAAATGACGTCAAATAAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTC          >  2:2488579/1‑100
                                                 AGGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTC          >  1:1735105/1‑100
                                                 AGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTC          >  1:3387022/1‑100
                                                 AGGTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTC          >  2:163779/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG         >  2:1448244/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG         >  1:49773/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG         >  1:1379163/1‑100
                                                  GGTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCG         >  1:1113807/1‑100
                                                   GTCGGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGC        >  2:2494640/1‑100
                                                   GTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGC        >  2:3257878/1‑100
                                                   GTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGC        >  1:303925/1‑100
                                                   GTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGC        >  1:2589892/1‑100
                                                   GTCGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGC        >  1:1581500/1‑100
                                                   GTCGCAGAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATAAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAACGTCGC        >  2:4223510/1‑100
                                                     CGGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCAT      >  1:2758725/1‑100
                                                      gaATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:717898/3‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC     >  1:3334939/1‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC     >  1:1026490/1‑100
                                                      GGATAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAACCACCCCATTGCGCTGTCTGGCGTACGCCTGATAAGACGCCGCCCGCGCCGCAcc     >  2:3722957/1‑98
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGTGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:2796721/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:111242/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:4397837/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:3299983/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:2879501/1‑100
                                                      GGATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTCGCATC     >  1:2131866/1‑100
                                                       GATAAGGCGTTTACGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGTTAAGCGTTGCATCA    >  2:3757591/1‑100
                                                         TAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG  >  1:2281126/1‑100
                                                         TAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG  >  1:1368132/1‑100
                                                         TAAGGCGTTTATGCCGCATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG  >  2:829464/1‑100
                                                                                 |||||||||||||||||||||||||||||||||||||||||                                   
ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4296200‑4296280
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG  <  NC_000913/4296433‑4296399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.