| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 411214 | 224 (1.240) | 36 (0.350) +ACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAG |
8/114 | 14.3 | 35.7% | noncoding (137/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4296280 | 1 (0.010) | noncoding (446/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/411181‑411214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGAT < NC_000913/4296280‑4296200 |||||||||||||||||||||||||||||||||||||||||| CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTA < 2:829464/100‑1CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTA < 1:1368132/100‑1CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTA < 1:2281126/100‑1 TGATGCAACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATC < 2:3757591/100‑1 ggTGCGGCGCGGGCGGCGTCTTATCAGGCGTACGCCAGACAGCGCAATGGGGTGGTTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCC < 2:3722957/98‑1 GATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCC < 1:1026490/100‑1 GATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCC < 1:3334939/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATtc < 1:717898/100‑3 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:111242/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:4397837/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:3299983/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:2879501/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:2131866/100‑1 GATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCACAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCC < 1:2796721/100‑1 ATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCG < 1:2758725/100‑1 GCGACGTTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTTATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTCTGCGAC < 2:4223510/100‑1 GCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGAC < 2:2494640/100‑1 GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGAC < 1:2589892/100‑1 GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGAC < 1:303925/100‑1 GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGAC < 1:1581500/100‑1 GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGAC < 2:3257878/100‑1 CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACC < 1:1113807/100‑1 CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACC < 1:1379163/100‑1 CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACC < 2:1448244/100‑1 CGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACC < 1:49773/100‑1 GACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTTATTTGACGTCATTTTGTAGCTCGGATGCGGCATAAACCCCTTATCCGACCT < 2:2488579/100‑1 GACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACCT < 1:1735105/100‑1 GACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCT < 2:163779/100‑1 GACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCT < 1:3387022/100‑1 ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACCTA < 1:2336040/100‑1 ACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAGTAGCGTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCTA < 2:1002510/100‑1 CGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCTAC < 2:1502536/100‑1 TTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCATAAACGCCTTATCCGACCTATAAA < 2:4113662/100‑1 aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAAT < 1:3818962/98‑1 GCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCAC < 2:1536806/100‑1 GTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTATGTCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGC < 1:4413915/100‑1 ATTTAACGTGATTTTGTAGGTCGGACGCGGCATAAACGCCTTATCCGCCCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGAT < 1:2492834/100‑1 |||||||||||||||||||||||||||||||||||||||||| CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/411181‑411214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATCAGGCTATTGCGCTGTCTGGCGTAGGCCTGAT < NC_000913/4296280‑4296200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |