| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4029696 = | 159 (1.180) | 21 (0.170) | 16/182 | 9.6 | 12.5% | coding (1276/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| ? | NC_000913 | 4029719 = | 146 (1.170) | coding (1253/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4029800‑4029696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgtACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGTC > NC_000913/4029719‑4029816 ACCGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGC < 1:390944/99‑1ACCGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGC > 1:2928632/1‑99ACCGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGC < 1:2774629/99‑1 CGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTG > 1:133365/1‑99 CGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTG > 2:1833263/1‑99 ggGTGGATATTGTGGGAGAAGCAGTTGTTGAAAACCTGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGG < 2:850975/97‑1 CGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGC > 2:1940228/1‑99 CGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGC < 2:1248178/99‑1 CGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGC < 1:1754955/99‑1 TGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGCGT < 1:1191688/99‑1 CCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTT > 2:56154/1‑99 TGGCAGAAACCGAACAAAAGGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACA > 1:2713548/1‑99 GCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAAC > 1:568555/1‑99 GAACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTAC > 1:962726/1‑99 GAACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTAC > 2:2164259/1‑99 AACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACC > 1:2828517/1‑99 ACAAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCA > 2:2893176/1‑99 AAAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCCTTTTACACTTTGGGGGTTTCAACAACCGCTTCTACCACA > 2:750078/1‑99 AAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAA > 1:52754/1‑99 AAAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAA > 2:1078901/1‑99 AAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAAT > 2:288627/1‑99 AAAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAAT > 2:557759/1‑99 AAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATA > 2:2882654/1‑99 AAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATA > 2:2187975/1‑99 AAGTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTACACTGTCGGTTTTTCAACGACCGCTTCTACCACAATA > 1:2262472/1‑99 GTACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATC > 2:295270/1‑99 TACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCC > 2:1501173/1‑99 ACGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCA > 2:1024802/1‑99 CGCCAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCAC > 2:807754/1‑99 CAGGATACCGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTTTTTTTCTGGTTTTCAACAACCGCTTCTACCACAATATTCACGCG > 2:1337430/1‑99 CGTGCTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATC < 1:1354555/99‑1 CTGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGC < 1:1197036/99‑1 TGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCG < 1:685467/99‑1 TGGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCG > 1:2888078/1‑99 GGCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGT > 2:3012125/1‑99 GCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTA < 2:1033963/99‑1 GCGTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTA < 2:51207/99‑1 GTACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGT < 1:473648/99‑1 TACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCTTTTTTGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGTC > 2:1015720/1‑99 TACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGTC < 1:434758/99‑1 TACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGTC < 1:3063994/99‑1 ACCGCGTGGATATTGTGGTAGAAGCGGTTGTTGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAACAAAAAGTACGCCAGGATACCGTGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4029800‑4029696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgtACTTTTTGTTCGGTTTCTGCCAGTACGGCTTTTTTCACTTTCGGGTTTTCAACAACCGCTTCTACCACAATATCCACGCGGTCAAATCCGGCGTAGTC > NC_000913/4029719‑4029816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |