BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1468681	NA (NA)	92 (1.240) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	11/108	7.0	NA	noncoding (560/1331 nt)	IS2	repeat region
*	?	NC_000913	1650843 =	NA (NA)	92 (1.240) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	11/108	7.0	NA	noncoding (1/706 nt)	IS2	repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 127 total aligned reads displayed.

GTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650746‑1650940

gTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTa                                                                                                  >  1:1103946/1‑99 (MQ=255)

gTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTa                                                                                                  >  1:2190159/1‑99 (MQ=255)

 tACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTAt                                                                                                 <  1:2662176/99‑1 (MQ=255)

   cacTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATgg                                                                                               >  1:2270806/1‑99 (MQ=255)

     cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                             >  2:2321246/1‑99 (MQ=255)

     cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                             >  2:281031/1‑99 (MQ=255)

      tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                            <  2:216940/99‑1 (MQ=255)

       gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcgc                                                                                           <  2:2590961/99‑1 (MQ=255)

       gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcgc                                                                                           <  1:2228453/99‑1 (MQ=255)

       gAAAATTCAACAGCAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcgc                                                                                           <  2:1793294/99‑1 (MQ=255)

          aaTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgctgc                                                                                        >  1:1029571/1‑99 (MQ=255)

          aaTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgctgc                                                                                        <  1:1606442/99‑1 (MQ=255)

             tCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTc                                                                                     <  2:1132232/99‑1 (MQ=255)

               aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   <  1:779199/99‑1 (MQ=255)

                aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  1:1689021/99‑1 (MQ=255)

                 cAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCCGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAg                                                                                 >  1:123644/1‑99 (MQ=255)

                  aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCCGa                                                                                >  1:2929176/1‑99 (MQ=255)

                  aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                <  1:2880314/99‑1 (MQ=255)

                   ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGAc                                                                               >  1:580310/1‑99 (MQ=255)

                    gAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                              <  2:1296262/99‑1 (MQ=255)

                     aaaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAg                                                                             <  1:855045/99‑1 (MQ=255)

                      aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAgg                                                                            <  2:1699652/99‑1 (MQ=255)

                       aaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                           <  1:792280/99‑1 (MQ=255)

                       aaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                           >  1:6403/1‑99 (MQ=255)

                         aTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAg                                                                         >  1:3326348/1‑99 (MQ=255)

                          tCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGa                                                                        >  1:2755279/1‑99 (MQ=255)

                               ccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTg                                                                   >  1:146207/1‑99 (MQ=255)

                                cGGTCATTGCTGCCATTCATCTCAAATACACGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGACAGAACTTGa                                                                  <  2:301769/99‑1 (MQ=38)

                                cGGTCATTGCTGCCATCCAGAGCGAATCCGAGGAGACATGGAAAGCGGTAGCTAAAGCACTAACCTATGGGCGATGCTTAGCGGTCAGGAAGAACTTGa                                                                  >  2:64577/1‑99 (MQ=255)

                                acgTCATTGCAGCCAAAACTCCCGAATACAAGCAACAATGGACAACAATGGATGACGAACTGGCCTATGGACGATGATTCGCAGACAGGCAGAACTTGa                                                                  <  2:2237533/97‑1 (MQ=19)

                                  gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  1:933647/99‑1 (MQ=255)

                                  gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  1:3014888/99‑1 (MQ=255)

                                        gctgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGc                                                          >  1:2033059/1‑99 (MQ=255)

                                        gctgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGc                                                          >  1:1671584/1‑99 (MQ=255)

                                         ctcccATTCATCGCGAATACAAACAGACATGCAAAACACTGGATGACGCACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGTACTTGATGGTATGcc                                                         >  2:393613/4‑99 (MQ=25)

                                          tgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCt                                                        <  1:2905474/99‑1 (MQ=255)

                                            ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      >  1:569414/1‑99 (MQ=255)

                                            ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      >  2:441546/1‑99 (MQ=255)

                                            ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      <  2:3732/99‑1 (MQ=255)

                                              aTTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGa                                                    >  2:2774519/1‑99 (MQ=255)

                                               ttCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGAt                                                   <  2:244622/99‑1 (MQ=255)

                                                  aTCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCaa                                                >  2:723957/1‑99 (MQ=255)

                                                   tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               >  1:1356078/1‑99 (MQ=255)

                                                   tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               >  1:2666134/1‑99 (MQ=255)

                                                   tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               <  2:750372/99‑1 (MQ=255)

                                                   tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               >  1:1201922/1‑99 (MQ=255)

                                                     gcgAATACAATCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                             >  2:1417806/1‑99 (MQ=255)

                                                     gcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                             >  2:1605633/1‑99 (MQ=255)

                                                       gAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCa                                           >  1:1857787/1‑99 (MQ=255)

                                                         aTACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCaaa                                         <  2:2463748/99‑1 (MQ=255)

                                                          tACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAAc                                        <  2:1583576/99‑1 (MQ=255)

                                                          tACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAAc                                        <  2:2463991/99‑1 (MQ=255)

                                                           tcAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACg                                       <  1:2826620/98‑1 (MQ=255)

                                                             aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  2:2762315/1‑99 (MQ=255)

                                                             aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  2:2151508/1‑99 (MQ=255)

                                                             aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  1:2492251/1‑99 (MQ=255)

                                                             aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgta                                     >  2:2792226/1‑98 (MQ=255)

                                                             aaGCAGACATGGAAAACACAGGATCGCGAACTGGCCGATGGGCGCTGGTTCGCAGACATGCAGAACTTGATGGTATTCCTGCGATCAACGCCAAACgtg                                     >  2:1175882/1‑99 (MQ=18)

                                                                 aGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTa                                 >  2:1429013/1‑99 (MQ=255)

                                                                   aCATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                               >  2:1438813/1‑99 (MQ=255)

                                                                   aCATGGAAAACACTGGATGACGAACTGGCCCATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                               >  2:1806224/1‑99 (MQ=255)

                                                                    cATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTATCg                              <  1:2678574/99‑1 (MQ=255)

                                                                     aTGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCgg                             >  1:332230/1‑99 (MQ=255)

                                                                     aTGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCgg                             >  1:2649252/1‑99 (MQ=255)

                                                                      tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  2:765037/1‑99 (MQ=255)

                                                                      tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  2:1895570/1‑99 (MQ=255)

                                                                      tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            <  2:3040884/99‑1 (MQ=255)

                                                                      tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            <  1:1446756/99‑1 (MQ=255)

                                                                        gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATc                          >  1:1961119/1‑99 (MQ=255)

                                                                         aaaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCa                         >  2:594668/1‑99 (MQ=255)

                                                                          aaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCAt                        >  1:509906/1‑99 (MQ=255)

                                                                            acacTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCATACGTGTTTACCGGATCATgc                      <  2:1889700/99‑1 (MQ=255)

                                                                             cacTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcg                     >  1:732551/1‑99 (MQ=255)

                                                                              acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    <  1:884387/99‑1 (MQ=255)

                                                                              acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    >  2:3298116/1‑99 (MQ=255)

                                                                              acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    >  2:327389/1‑99 (MQ=255)

                                                                              acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    >  1:2011153/1‑99 (MQ=255)

                                                                               cTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCTGATCATGCGcc                   <  2:1956989/99‑1 (MQ=255)

                                                                                tGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCa                  <  1:2480780/99‑1 (MQ=255)

                                                                                  gATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGa                >  1:873198/1‑99 (MQ=255)

                                                                                  gATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGa                <  1:1796397/99‑1 (MQ=255)

                                                                                  gATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGa                >  1:3192312/1‑99 (MQ=255)

                                                                                   aTGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGaa               <  2:1212881/99‑1 (MQ=255)

                                                                                    tGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAAt              <  1:1624865/99‑1 (MQ=255)

                                                                                    tGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAAt              <  2:1691208/99‑1 (MQ=255)

                                                                                      aCGAACTGGCCTATGGACGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCGGCGATCAATGCCAAACGTGCTTACCCGATCATGCGCCAGAATgc            >  2:3374410/1‑99 (MQ=14)

                                                                                       cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCCATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg           <  2:2630543/99‑1 (MQ=255)

                                                                                       cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg           <  1:2526951/99‑1 (MQ=255)

                                                                                       cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg           <  1:196827/99‑1 (MQ=255)

                                                                                        gAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcgc          >  1:3105523/1‑99 (MQ=40)

                                                                                        gAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcgc          >  1:913341/1‑99 (MQ=40)

                                                                                         aaCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCt         <  1:2294994/99‑1 (MQ=39)

                                                                                           cTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGt       <  1:1457659/99‑1 (MQ=37)

                                                                                            tGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGtt      <  1:279506/99‑1 (MQ=35)

                                                                                              gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    >  2:2801697/1‑99 (MQ=33)

                                                                                              gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    <  1:1865780/99‑1 (MQ=33)

                                                                                              gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    <  2:221136/99‑1 (MQ=33)

                                                                                                cTATGGGCGCTGCTTCGCAGACATGCAGACCTTGATGGTATGCCTGCGATCAATGCCAAAAGTGTTTACCCGGTCATGCGTCAGAATGCGCTGTTGcat  >  2:2708423/1‑97 (MQ=11)

                                                                                                cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  <  1:432894/99‑1 (MQ=31)

                                                                                                cTATGGGCGCGGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  <  2:2881423/99‑1 (MQ=14)

GTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650746‑1650940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.