Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913314,2550TC22.4% 317.8 / 92.5 172intergenic (‑450/‑102)ykgP/eaeHpseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
Reads supporting (aligned to +/- strand):  ref base T (71/61);  new base C (23/15);  total (94/78)
Fisher's exact test for biased strand distribution p-value = 5.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 177 total aligned reads displayed.

AAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATC  >  NC_000913/314157‑314353
                                                                                                  |                                                                                                  
aaaaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCt                                                                                                    >  1:405252/1‑99 (MQ=255)
  aaaTATAATCGCGCGCCCAACCACATGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGc                                                                                                  >  2:368839/1‑99 (MQ=255)
  aaaTATAATCCCGCGCCCAACCACCTGATGCGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGc                                                                                                  >  1:2627325/1‑99 (MQ=255)
  aaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGc                                                                                                  >  1:389506/1‑99 (MQ=255)
   aaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCg                                                                                                 <  1:511133/99‑1 (MQ=255)
    atatAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCgg                                                                                                >  1:1352055/1‑99 (MQ=255)
     tataATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGa                                                                                               >  1:2374923/1‑99 (MQ=255)
       taATCCCGCGCCCAACCACCTGATGACTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGaaa                                                                                             <  2:2551726/99‑1 (MQ=255)
        aaTCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGaaaa                                                                                            <  2:210037/99‑1 (MQ=255)
        aaTCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGaaaa                                                                                            <  1:2056119/99‑1 (MQ=255)
        aaTCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGaaaa                                                                                            <  2:120630/99‑1 (MQ=255)
          tCCCGCGCCCAACCACCTGATGAGTGGCTATAGTCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAgg                                                                                          <  2:2888092/99‑1 (MQ=255)
          tCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAgg                                                                                          <  1:3197430/99‑1 (MQ=255)
          tCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAgg                                                                                          <  1:2647784/99‑1 (MQ=255)
           cccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGa                                                                                         <  1:1090616/99‑1 (MQ=255)
           accGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGa                                                                                         <  2:223837/98‑1 (MQ=255)
            ccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaa                                                                                        <  2:2492927/99‑1 (MQ=255)
            ccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGaa                                                                                        <  2:2241413/99‑1 (MQ=255)
              gcgcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAAt                                                                                      >  1:2395497/1‑99 (MQ=255)
              gcgcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAt                                                                                      <  1:994664/99‑1 (MQ=255)
              gcgcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAt                                                                                      <  2:1391500/99‑1 (MQ=255)
                gcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCg                                                                                    <  1:3050742/99‑1 (MQ=255)
                 cccAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCgg                                                                                   >  2:3112255/1‑99 (MQ=255)
                 cccAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAtacc                                                                                   <  1:1256610/99‑4 (MQ=38)
                   cAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGa                                                                                 <  2:137186/99‑1 (MQ=255)
                   cAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGa                                                                                 <  1:1188234/99‑1 (MQ=255)
                     accaccTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGaaa                                                                               >  2:1822326/1‑99 (MQ=255)
                      ccaccTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAAt                                                                              >  2:673006/1‑99 (MQ=255)
                       caccTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATc                                                                             <  1:2429611/99‑1 (MQ=255)
                          ctgctgAGTGGCTATCGGCACTGGATATATTAGGTGGCGGTGGACTTTCTTACATAAAGGTATTTCCTTTTCTGCCGAAAAGGACATCGGGAAATcacc                                                                          >  2:3323310/1‑99 (MQ=255)
                               gaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGttt                                                                     >  2:3009199/1‑99 (MQ=255)
                                 gTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGttttt                                                                   <  2:1086157/99‑1 (MQ=255)
                                    gCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTg                                                                >  1:2574765/1‑99 (MQ=255)
                                       ataCGCTCTAGATATAGTAGGTTGCGGTCCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGACATGGAAATGGGGGAATCCCTTGTTTTTCTGAct                                                             >  2:1249772/1‑98 (MQ=255)
                                        taGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACaa                                                            <  2:327126/99‑1 (MQ=255)
                                        taGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCGGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACaa                                                            <  1:3299288/99‑1 (MQ=255)
                                         aGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAg                                                           >  2:970573/1‑99 (MQ=255)
                                          ggCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGc                                                          <  1:3382961/99‑1 (MQ=255)
                                           gCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCa                                                         >  1:2498163/1‑99 (MQ=255)
                                            cACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAg                                                        >  2:1974261/1‑99 (MQ=255)
                                                ggATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGc                                                    >  2:1271777/1‑99 (MQ=255)
                                                ggATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGc                                                    <  2:2012595/99‑1 (MQ=255)
                                                ggATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGc                                                    >  2:797440/1‑99 (MQ=255)
                                                 gATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGcc                                                   >  1:2526878/1‑99 (MQ=255)
                                                    atatTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCatt                                                >  1:3104130/1‑99 (MQ=255)
                                                    atatTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCatt                                                <  1:2935282/99‑1 (MQ=255)
                                                      atTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCattat                                              >  2:1130011/1‑99 (MQ=255)
                                                       ttAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCattatt                                             >  2:2772132/1‑99 (MQ=255)
                                                        tAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTAttt                                            <  1:1408122/99‑1 (MQ=255)
                                                        tAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTAttt                                            >  2:2562413/1‑99 (MQ=255)
                                                          ggTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgt                                          <  1:2089712/99‑1 (MQ=255)
                                                          ggTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgt                                          <  1:2236661/99‑1 (MQ=255)
                                                          ggTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgt                                          <  1:884334/99‑1 (MQ=255)
                                                            tGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTgtgt                                        <  2:778414/99‑1 (MQ=255)
                                                              gCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCt                                      >  2:2364308/1‑99 (MQ=255)
                                                               cGGTGCACTTTCTTACATAAAGGTATTTCATTATCTAAAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTg                                     <  2:907870/99‑1 (MQ=255)
                                                                 gTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGcc                                   >  1:2834712/1‑99 (MQ=255)
                                                                 gTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGcc                                   >  1:3335628/1‑99 (MQ=255)
                                                                    cACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTAt                                <  2:1783524/99‑1 (MQ=255)
                                                                    cACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTAt                                >  1:617564/1‑99 (MQ=255)
                                                                     aCTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATg                               >  2:1834493/1‑99 (MQ=255)
                                                                      cTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGt                              <  1:2771503/99‑1 (MQ=255)
                                                                          cTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGt                          <  2:2906309/99‑1 (MQ=255)
                                                                           ttACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATGGGGAAATCCCCGTTTTTTCTGATAAGCAGACGCCATTATTTGTGTCTACCTATGTTCGtt                         >  2:2031007/1‑99 (MQ=255)
                                                                             aCATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTaa                       >  1:712415/1‑99 (MQ=255)
                                                                             aCATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTaa                       >  1:640429/1‑99 (MQ=255)
                                                                             aCATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTaa                       >  2:2499697/1‑99 (MQ=255)
                                                                             aCATAAAGGTATTTCCTTGTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTaa                       <  1:3263046/99‑1 (MQ=255)
                                                                               aTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAAtt                     <  2:206546/99‑1 (MQ=255)
                                                                               aTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAAtt                     >  2:606149/1‑99 (MQ=255)
                                                                               aTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAAtt                     <  1:1696053/99‑1 (MQ=255)
                                                                                tAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTc                    <  2:836402/99‑1 (MQ=255)
                                                                                 aaaGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCg                   >  1:2147292/1‑99 (MQ=255)
                                                                                  aaGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGt                  >  2:1570320/1‑99 (MQ=255)
                                                                                    ccgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtc                >  1:2995057/4‑99 (MQ=38)
                                                                                     cgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtca               >  2:2402067/3‑99 (MQ=39)
                                                                                     cgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtca               >  2:656128/3‑99 (MQ=39)
                                                                                     cgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtca               >  1:1470364/3‑99 (MQ=39)
                                                                                      tATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              <  2:117262/99‑1 (MQ=255)
                                                                                      gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              >  1:1889160/2‑99 (MQ=255)
                                                                                      gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              >  2:2789181/2‑99 (MQ=255)
                                                                                      gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              >  1:930721/2‑99 (MQ=255)
                                                                                      gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              >  2:1937958/2‑99 (MQ=255)
                                                                                      gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat              >  1:1532975/2‑99 (MQ=255)
                                                                                       aTTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc             <  1:689895/99‑1 (MQ=255)
                                                                                       aTTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc             <  1:810611/99‑1 (MQ=255)
                                                                                       aTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc             >  1:1842579/1‑99 (MQ=255)
                                                                                        tttCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca            <  2:3115733/99‑1 (MQ=255)
                                                                                        tttCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca            <  2:2051164/99‑1 (MQ=255)
                                                                                        tttCCTTTTCCGCAGAAAAGGAAATCGGGAAATCACCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca            >  1:1084556/1‑99 (MQ=255)
                                                                                         ttCCTTTTCTGCGTAAAAGGAAATCGGGAAATCCCCGGTTTTCCTGATAAGCAGAAGCCATTATTTGTGTCTGCTTATGTTCGTTAATTCGTTCATCAg           <  2:2534747/99‑1 (MQ=255)
                                                                                         ttCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAg           >  2:2348202/1‑99 (MQ=255)
                                                                                         ttCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAg           >  2:239566/1‑99 (MQ=255)
                                                                                          tCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAgg          <  1:42977/99‑1 (MQ=255)
                                                                                          tCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAgg          >  1:2020806/1‑99 (MQ=255)
                                                                                            cTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGaa        >  1:2743094/1‑99 (MQ=255)
                                                                                             ttttCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTTTTTTTTTTTTACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGaaa       >  2:3025465/1‑99 (MQ=255)
                                                                                                  tGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAtc  >  1:77640/1‑99 (MQ=255)
                                                                                                  tGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAtc  >  2:484390/1‑99 (MQ=255)
                                                                                                  tGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAtc  <  1:147314/99‑1 (MQ=255)
                                                                                                  |                                                                                                  
AAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATC  >  NC_000913/314157‑314353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑