BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,311,831	0	C	T	23.3%	247.0 / 71.3	133	intergenic (+23/+17)	tonB/yciA	membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
Reads supporting (aligned to +/- strand): ref base C (48/54); new base T (19/12); total (67/66)
Fisher's exact test for biased strand distribution p-value = 2.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 136 total aligned reads displayed.

TGAGCCGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGCTTTATAGCGT  >  NC_000913/1311733‑1311929

tGAGCCGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGAc                                                                                                    <  1:1529872/99‑1 (MQ=255)

 gAGCCGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGAcc                                                                                                   >  2:1534090/1‑99 (MQ=255)

   gCCGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCgg                                                                                                 >  1:2616157/1‑99 (MQ=255)

    ccGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGa                                                                                                <  1:2502919/99‑1 (MQ=255)

     cGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAg                                                                                               <  2:1285114/99‑1 (MQ=255)

      gggTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAgg                                                                                              <  1:2361302/99‑1 (MQ=255)

         tAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCtt                                                                                           <  1:18884/99‑1 (MQ=255)

          aaGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCttt                                                                                          <  1:2165392/99‑1 (MQ=255)

          aaGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCttt                                                                                          <  1:910991/99‑1 (MQ=255)

          aaGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCttt                                                                                          <  2:1751042/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCtttt                                                                                         <  2:343858/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCtttt                                                                                         <  1:1552108/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCtttt                                                                                         <  2:2700134/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCtttt                                                                                         <  1:2134301/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCtttt                                                                                         <  2:1360582/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCtttt                                                                                         <  1:1240351/99‑1 (MQ=255)

           aGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCAGACCGGAGGCtttt                                                                                         <  2:447732/99‑1 (MQ=255)

            gCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGTCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCTTTTg                                                                                        <  1:29887/99‑1 (MQ=39)

            gCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCTTTTg                                                                                        <  1:2498747/99‑1 (MQ=255)

            gCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGGTCGGAGGCTTTTg                                                                                        <  2:2438408/99‑1 (MQ=255)

            gCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTg                                                                                        >  1:2498118/1‑99 (MQ=255)

             caaGGCAGTGCGACTGTCGTGAATATCCTGTTTAAACTTAACGGCACCACCGAAATTCAGTAAGCAGCAACTCCAACGCCTCCGCCCGGAGGATATTGa                                                                                       >  2:140593/3‑99 (MQ=255)

              cAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGAc                                                                                      <  1:1451495/99‑1 (MQ=255)

                ggCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTa                                                                                    <  1:2983623/99‑1 (MQ=255)

                 gCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTAt                                                                                   <  1:1641172/99‑1 (MQ=255)

                    gTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTAc                                                                                <  2:2270492/99‑1 (MQ=255)

                     tGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACt                                                                               >  2:33476/1‑99 (MQ=255)

                       ggATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCa                                                                             <  1:767377/99‑1 (MQ=255)

                        gATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCaa                                                                            <  1:747842/99‑1 (MQ=255)

                        gATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCaa                                                                            <  1:33946/99‑1 (MQ=255)

                        gATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCaa                                                                            <  2:3317006/99‑1 (MQ=255)

                         aTTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAAc                                                                           <  2:2628052/99‑1 (MQ=255)

                             tggtgAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGt                                                                       <  1:2554971/99‑1 (MQ=255)

                             tggtaAATATCCTGCTTAAAATTAACGGCACCACCGAAATACTGTAAGGAGAAAGGCAAAAGCCTCCGTCCGGAGGCATTCGCCTATCACTCAACACGt                                                                       >  2:3405684/1‑99 (MQ=255)

                               gtgAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTaa                                                                     >  2:2644200/1‑99 (MQ=255)

                               gtgAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTaa                                                                     <  1:1608508/99‑1 (MQ=255)

                               gtgAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTaa                                                                     >  1:1932853/1‑99 (MQ=255)

                                tgAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAg                                                                    >  1:1987024/1‑99 (MQ=255)

                                   atatCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGgcg                                                                 <  1:1185103/99‑1 (MQ=255)

                                      tCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGa                                                              >  2:176206/1‑99 (MQ=255)

                                       ccTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAg                                                             >  2:1310704/1‑99 (MQ=255)

                                        cTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAgg                                                            >  1:3376745/1‑99 (MQ=255)

                                         tGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGAAAGGCGCGAGGt                                                           >  2:1484802/1‑99 (MQ=255)

                                           tttAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGttt                                                         >  2:223653/1‑99 (MQ=255)

                                           tttAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACCCAACAGGTAAGGCGCGAGGatt                                                         >  2:1385018/1‑99 (MQ=255)

                                            ttAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGtttt                                                        <  2:1057892/99‑1 (MQ=255)

                                             tAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAACAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTc                                                       >  2:301285/1‑99 (MQ=255)

                                             tAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTc                                                       <  2:1611019/99‑1 (MQ=255)

                                             tAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTc                                                       <  1:793598/99‑1 (MQ=255)

                                             tAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTc                                                       >  1:1093288/1‑99 (MQ=255)

                                              aaaaTTAACGGCACCACCGAAATGCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTGTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTcc                                                      <  2:2814680/99‑1 (MQ=255)

                                                aaTTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCtt                                                    <  1:901768/99‑1 (MQ=255)

                                                 aTTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTc                                                   <  1:1180435/99‑1 (MQ=255)

                                                  ttAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCa                                                  <  1:2922321/99‑1 (MQ=255)

                                                  ttAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCa                                                  >  1:376845/1‑99 (MQ=255)

                                                   tAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGATTTCCTTCAg                                                 >  2:2794489/1‑99 (MQ=255)

                                                     aCGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGa                                               <  1:1327604/99‑1 (MQ=255)

                                                      cGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGAt                                              <  1:687937/99‑1 (MQ=255)

                                                       ggCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATc                                             >  1:2447585/1‑99 (MQ=255)

                                                         caccacCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCaa                                           >  2:2167312/1‑99 (MQ=255)

                                                           ccaccGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAAcc                                         <  1:106941/99‑1 (MQ=255)

                                                            caccGAAATTCTGCAAGCAGAAAGTCAAAAGACACCGCTTATTGGCTTTTGACTATTACTCGACAGGTACTGCGCCCGGTTTTCCTTCAGGATCaatca                                        <  2:763164/99‑4 (MQ=255)

                                                            caccGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACcg                                        <  1:2475407/99‑1 (MQ=255)

                                                              ccGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACcgcg                                      >  2:3132311/1‑99 (MQ=255)

                                                               cGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGa                                     <  2:1545665/99‑1 (MQ=255)

                                                               cGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGa                                     >  2:1681999/1‑99 (MQ=255)

                                                               cGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGa                                     >  1:12131/1‑99 (MQ=255)

                                                                    ttCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATAc                                <  2:2542661/99‑1 (MQ=255)

                                                                    ttCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATAc                                >  1:2632609/1‑99 (MQ=255)

                                                                    ttCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATAc                                >  1:1819749/1‑99 (MQ=255)

                                                                      cAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTCCTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACtt                              <  2:1717751/99‑1 (MQ=255)

                                                                       aGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTa                             >  1:2825499/1‑99 (MQ=255)

                                                                       aGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTa                             >  1:1301050/1‑99 (MQ=255)

                                                                        gTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTaa                            <  1:2299421/99‑1 (MQ=255)

                                                                        gTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTaa                            <  2:1956107/99‑1 (MQ=255)

                                                                         tAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTaaa                           >  1:1184563/1‑99 (MQ=255)

                                                                         tAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTaaa                           <  2:1972924/99‑1 (MQ=255)

                                                                          aaGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAaat                          <  1:139289/99‑1 (MQ=255)

                                                                             cAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAaataat                       >  2:1760625/1‑99 (MQ=255)

                                                                                ataGTCAAAAGCCTCGGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCt                    >  2:3285684/3‑99 (MQ=38)

                                                                                 aaGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCtt                   <  1:2414409/99‑1 (MQ=255)

                                                                                   gTCAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCt                 >  1:2147957/1‑99 (MQ=255)

                                                                                    tCAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTg                >  2:3104630/1‑99 (MQ=255)

                                                                                    tCAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTg                >  1:492701/1‑99 (MQ=255)

                                                                                    tCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTg                >  2:2702420/1‑99 (MQ=255)

                                                                                    tCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTg                >  1:1857200/1‑99 (MQ=255)

                                                                                     cAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGt               >  2:1931908/1‑99 (MQ=255)

                                                                                     cAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGt               >  1:1253645/1‑99 (MQ=255)

                                                                                     cAAAAGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGt               >  1:437531/1‑99 (MQ=255)

                                                                                      aaaaGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTc              >  2:1061327/1‑99 (MQ=255)

                                                                                      aaaaGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGCTAAGGCGGGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTc              >  1:3304103/1‑99 (MQ=38)

                                                                                      aaaaGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTc              >  1:1137488/1‑99 (MQ=255)

                                                                                       aaaGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCg             >  1:2695729/1‑99 (MQ=255)

                                                                                       aaaGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCg             >  2:122540/1‑99 (MQ=255)

                                                                                       aaaGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCg             >  1:2548627/1‑99 (MQ=255)

                                                                                       aaaGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCg             >  1:2549041/1‑99 (MQ=255)

                                                                                        aaGCCTCCGGTCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGc            >  1:1952484/1‑99 (MQ=255)

                                                                                             tCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGCTTtat       >  2:2017416/1‑99 (MQ=255)

                                                                                               cGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGCTTTATAg     >  2:2553627/1‑99 (MQ=255)

                                                                                                  ccGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGCTTTATAGCGt  <  2:562215/99‑1 (MQ=255)

TGAGCCGGGTAAGCCAGGCAGTGGGATTGTGGTGAATATCCTGTTTAAAATTAACGGCACCACCGAAATTCAGTAAGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTATTACTCAACAGGTAAGGCGCGAGGTTTTCCTTCAGGATCAACCGCGACATACTTAAATAATGCTTCTGTCGCTTTATAGCGT  >  NC_000913/1311733‑1311929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`