Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,354,6070CA74.6% 185.5 / 85.4 126V288V (GTG→GTT) sapBantimicrobial peptide transport ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base C (21/11);  new base A (62/32);  total (83/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

GTAAGGCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTGATCATC  >  NC_000913/1354510‑1354703
                                                                                                 |                                                                                                
gTAAGGCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCa                                                                                                 <  2:365200/99‑1 (MQ=255)
    ggCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTcc                                                                                             <  2:2768414/99‑1 (MQ=255)
    ggCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTcc                                                                                             >  1:2457151/1‑99 (MQ=255)
    ggCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTcc                                                                                             >  2:1147583/1‑99 (MQ=255)
       aTACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCcggc                                                                                          <  2:1657025/99‑1 (MQ=255)
        tACCATTCCTTGTGTTTCAGAGGGTTAGCCATGGCACCCACAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCcggcg                                                                                         <  1:3072492/99‑1 (MQ=255)
         aCCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCcggcgg                                                                                        >  2:190910/1‑99 (MQ=255)
           cATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGaa                                                                                      <  1:1769274/99‑1 (MQ=255)
            aTTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGaaa                                                                                     >  1:954952/1‑99 (MQ=255)
            aTTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGaaa                                                                                     >  1:1588062/1‑99 (MQ=255)
             ttCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAAt                                                                                    <  1:3185615/99‑1 (MQ=255)
                 ttATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCt                                                                                <  2:312747/99‑1 (MQ=255)
                 ttATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCt                                                                                >  1:133617/1‑99 (MQ=255)
                 ttATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCt                                                                                >  2:1136393/1‑99 (MQ=255)
                    tGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCg                                                                             >  2:1730336/1‑99 (MQ=255)
                      tttCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTa                                                                           >  1:2131955/1‑99 (MQ=255)
                       ttCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTaa                                                                          >  2:1327746/1‑99 (MQ=255)
                          agagGGTTAGCCATGGCACCCAAAATCTGAGAAATCACGTTAACAATAGTAACCAGTGAGCCACACACCATAACTCCGACGGAAATGGCTGCGTAATcc                                                                       >  2:3232098/1‑99 (MQ=255)
                          agagGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATcc                                                                       >  2:938609/1‑99 (MQ=255)
                          agagGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATcc                                                                       >  2:701432/1‑99 (MQ=255)
                            agGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCctg                                                                     <  1:2360251/99‑1 (MQ=255)
                               gTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCctgctg                                                                  >  2:1183537/1‑99 (MQ=255)
                                ttAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTgg                                                                 >  2:2377783/1‑99 (MQ=255)
                                   gCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCgg                                                              >  2:2663515/1‑99 (MQ=255)
                                    ccATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGa                                                             >  1:3098935/1‑99 (MQ=255)
                                    ccATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGa                                                             <  1:3180094/99‑1 (MQ=255)
                                     cATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACTAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGAt                                                            <  2:141923/99‑1 (MQ=255)
                                      aTGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATg                                                           >  2:3368779/1‑99 (MQ=255)
                                      aTGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATg                                                           >  1:106978/1‑99 (MQ=255)
                                      aTGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATg                                                           <  1:1815816/99‑1 (MQ=255)
                                       tGGCACCCAAAATATCCGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATTTCTGCGTAATCCTGCTGGCGGATgg                                                          >  2:173091/1‑99 (MQ=255)
                                         gCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCg                                                        <  1:1078336/99‑1 (MQ=255)
                                         gCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCg                                                        >  1:293848/1‑99 (MQ=255)
                                         gCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCg                                                        <  1:303431/99‑1 (MQ=255)
                                            cccAAAATATCAGAAATCGCGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCGGGCGGATGGCGtta                                                     >  2:3132625/1‑99 (MQ=255)
                                            cccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGtta                                                     >  2:894759/1‑99 (MQ=255)
                                            cccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGtta                                                     >  1:62427/1‑99 (MQ=255)
                                            cccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGtta                                                     >  1:2061816/1‑99 (MQ=255)
                                             ccAAACTATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaa                                                    <  1:159391/99‑1 (MQ=255)
                                             ccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaa                                                    >  2:2020899/1‑99 (MQ=255)
                                             ccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaa                                                    >  2:488232/1‑99 (MQ=255)
                                             ccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaa                                                    >  2:1658148/1‑99 (MQ=255)
                                             ccAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaa                                                    <  1:797455/99‑1 (MQ=255)
                                              ccaaaTATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCTTAATCCAGCTGGCGGATGGCGttaat                                                   <  2:3412986/97‑1 (MQ=255)
                                              cAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaat                                                   >  2:1093722/1‑99 (MQ=255)
                                              cAAAATATCAGAAAGCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCTGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaat                                                   >  1:3023773/1‑99 (MQ=255)
                                               aaaaTATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaatt                                                  >  1:2250416/1‑99 (MQ=255)
                                                 aaTATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGttaattaa                                                <  2:497342/99‑1 (MQ=255)
                                                  atatCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAAc                                               <  1:1769211/99‑1 (MQ=255)
                                                  atatCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAAc                                               <  1:1953342/99‑1 (MQ=255)
                                                   tatCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAAcc                                              <  1:1068375/99‑1 (MQ=255)
                                                    atCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCa                                             <  1:1539370/99‑1 (MQ=255)
                                                       aGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAgcg                                          >  1:2018588/1‑99 (MQ=255)
                                                       aGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAgcg                                          >  1:1370499/1‑99 (MQ=255)
                                                       aGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCAGGCGGAAATGGCTGCGTAATCCTGCTGGCGGCTGGCGTTACTTAACCAgcg                                          >  2:618385/1‑99 (MQ=255)
                                                        gAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAgcgc                                         >  1:3337469/1‑99 (MQ=255)
                                                         aaaTCACGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAAGCCTGCTGGCGGATGGCGTTAATTAACCAGCGcc                                        >  1:3443350/1‑99 (MQ=255)
                                                           aTCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCt                                      >  1:616847/1‑99 (MQ=255)
                                                              aCGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTaaa                                   <  2:2142136/99‑1 (MQ=255)
                                                               cGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAc                                  >  1:646848/1‑99 (MQ=255)
                                                               cGTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAc                                  <  1:3245308/99‑1 (MQ=255)
                                                                gTTAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAcc                                 >  1:3144520/1‑99 (MQ=255)
                                                                 ttAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAccc                                <  2:2841091/99‑1 (MQ=255)
                                                                 ttAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAccc                                <  1:20035/99‑1 (MQ=255)
                                                                  tAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCg                               <  1:193189/99‑1 (MQ=255)
                                                                  tAACAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCg                               >  2:362915/1‑99 (MQ=255)
                                                                   aaCAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCgg                              <  1:418372/99‑1 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGc                             >  2:221599/1‑99 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCGGGc                             >  1:1653597/1‑99 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGc                             >  2:281848/1‑99 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGc                             <  2:1853975/99‑1 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGc                             >  2:217914/1‑99 (MQ=255)
                                                                    aCAATAATGACCAGTGAGCCACACACCATAACTCCGGCGAAAATGGCTGCCTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTACACCCGGc                             >  1:2880149/1‑99 (MQ=255)
                                                                     cAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAAGCCGGcc                            >  1:1032943/1‑99 (MQ=255)
                                                                     cAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGcc                            >  2:2461470/1‑99 (MQ=255)
                                                                     cAATAATGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGcc                            >  1:2611782/1‑99 (MQ=255)
                                                                      aataatGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCa                           <  1:1481136/99‑1 (MQ=255)
                                                                      aataatGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCa                           >  1:2470269/1‑99 (MQ=255)
                                                                        taatGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGc                         >  1:312080/1‑99 (MQ=255)
                                                                        taatGACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGc                         >  1:879337/1‑99 (MQ=255)
                                                                            gACCAGTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTaaa                     >  1:826303/1‑99 (MQ=255)
                                                                                aGTGAGCCACACACCATAACTACGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAAcc                 <  2:1725222/99‑1 (MQ=255)
                                                                                 gTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCa                >  2:2069484/1‑99 (MQ=255)
                                                                                 gTGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCa                >  2:124167/1‑99 (MQ=255)
                                                                                  tGAGCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCAt               >  1:300536/1‑99 (MQ=255)
                                                                                    aGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGAAAGCTAAAAACCAttt             <  2:1751723/99‑1 (MQ=255)
                                                                                     gCCACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTc            >  2:2432468/1‑99 (MQ=255)
                                                                                      tgacacacCATAACACCGACGGAAGTGACTGCGTAATCCTTCGGGCGGGTGGCGTTAATGACCCAGCGCCCTACACCCGCCCATCTAAAAACCATTTCg           <  2:1619041/97‑1 (MQ=255)
                                                                                      ccACACACCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCg           >  2:1440527/1‑99 (MQ=255)
                                                                                       cacacaCCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCgg          >  1:344814/1‑99 (MQ=255)
                                                                                       cacacaCCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCgg          <  1:276851/99‑1 (MQ=255)
                                                                                       cacacaCCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCgg          <  1:276945/99‑1 (MQ=255)
                                                                                        acacacCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCTGt         <  2:2721774/99‑1 (MQ=255)
                                                                                         cacacCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGTGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTg        >  2:361639/1‑99 (MQ=255)
                                                                                         cacacCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTg        >  1:1500020/1‑99 (MQ=255)
                                                                                         cacacCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTg        >  1:1456660/1‑99 (MQ=255)
                                                                                           cacCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTGat      <  2:2019104/99‑1 (MQ=255)
                                                                                            acCATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATGTCGGTGatc     <  1:2832677/99‑1 (MQ=255)
                                                                                              cATAACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTGatcat   >  2:910137/1‑99 (MQ=255)
                                                                                               aTCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTGatcatc  >  1:493157/1‑99 (MQ=255)
                                                                                                 |                                                                                                
GTAAGGCATACCATTCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCACACACCATCACTCCGGCGGAAATGGCTGCGTAATCCTGCTGGCGGATGGCGTTAATTAACCAGCGCCCTAAACCCGGCCAGCTAAAAACCATTTCGGTGATCATC  >  NC_000913/1354510‑1354703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑