Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,406,0980CT22.0% 280.1 / 71.1 141D40D (GAC→GAT) smrADNA endonuclease
Reads supporting (aligned to +/- strand):  ref base C (52/58);  new base T (14/17);  total (66/75)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 146 total aligned reads displayed.

CTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGT  >  NC_000913/1406000‑1406196
                                                                                                  |                                                                                                  
cTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGac                                                                                                    >  2:712409/1‑99 (MQ=255)
  gTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGacac                                                                                                  >  2:2083735/1‑99 (MQ=255)
  gTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGCATCGacac                                                                                                  >  1:537826/1‑99 (MQ=255)
     tCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGATACCGATGTCCACTGGCATCCAACACGTAACCAACGTGCGCCGCAGCGTATCGACACGCt                                                                                               >  1:3035078/1‑99 (MQ=255)
      cTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTg                                                                                              <  1:1999762/99‑1 (MQ=255)
      cTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTg                                                                                              <  1:2742784/99‑1 (MQ=255)
       ttGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCAATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATAGACACGCTGc                                                                                             >  1:818314/1‑99 (MQ=255)
       ctGACTCCACGGAAGATGTCCAGCCGCTGAGACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGc                                                                                             <  1:2888554/98‑1 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATTTCGACTGGCATCCAACGCGTAACCCACGTCCGCCGCAGCGTATCGTCACGcatca                                                                                            >  2:629293/1‑95 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:371045/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:2391187/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:2364058/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:372020/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:2074486/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  1:1861577/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcg                                                                                            <  2:816135/99‑2 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCa                                                                                            <  1:2107070/99‑1 (MQ=255)
        tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCa                                                                                            <  1:1319158/99‑1 (MQ=255)
         gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcgg                                                                                           <  2:2131025/99‑3 (MQ=255)
         gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcgg                                                                                           <  1:2585579/99‑3 (MQ=255)
         gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcgg                                                                                           <  2:3291683/99‑3 (MQ=255)
         gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAg                                                                                           >  2:1339691/1‑99 (MQ=255)
         gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAg                                                                                           >  1:1143471/1‑99 (MQ=255)
           cGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCt                                                                                         <  1:1249379/99‑1 (MQ=255)
               aTGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     <  1:2883334/99‑1 (MQ=255)
               aTGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     >  2:1879623/1‑99 (MQ=255)
               aTGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     >  2:2218346/1‑99 (MQ=255)
               aTGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     <  2:240909/99‑1 (MQ=255)
               aTGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTACACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     >  1:3038727/1‑99 (MQ=255)
                  gAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAAt                                                                                  <  1:1097789/99‑1 (MQ=255)
                     gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTc                                                                               <  2:862018/99‑1 (MQ=255)
                     gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTc                                                                               <  1:1647235/99‑1 (MQ=255)
                      aTGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACGAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              >  1:3252206/1‑99 (MQ=255)
                      aTGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              <  2:1667515/99‑1 (MQ=255)
                       tGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCt                                                                             >  2:2473954/1‑99 (MQ=255)
                        gTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTc                                                                            >  1:74034/1‑99 (MQ=255)
                         tCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTca                                                                           >  1:2586157/1‑99 (MQ=255)
                         tCCAGCCGCTGAAACGTGCTACCGATGTCAACTGGCATCCAACGCGTAACTAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTca                                                                           <  2:491638/99‑1 (MQ=255)
                          ccAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTcac                                                                          <  2:3185859/99‑1 (MQ=255)
                           cAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTcacc                                                                         >  2:2082260/1‑99 (MQ=255)
                               cGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCg                                                                     >  1:2671743/1‑99 (MQ=255)
                                 cTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGa                                                                   <  1:1094713/99‑1 (MQ=255)
                                 cTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGa                                                                   <  2:1450526/99‑1 (MQ=255)
                                   gAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGAtt                                                                 <  1:2257/99‑1 (MQ=255)
                                     aaCGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTtc                                                               <  2:380051/99‑1 (MQ=255)
                                       cGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTtctc                                                             <  1:1484322/99‑1 (MQ=255)
                                       cGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTtctc                                                             <  1:2160727/99‑1 (MQ=255)
                                        gTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCg                                                            <  2:2431443/99‑1 (MQ=255)
                                        gTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCg                                                            >  2:3320428/1‑99 (MQ=255)
                                         tGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGa                                                           <  2:2556952/99‑1 (MQ=255)
                                         tGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGa                                                           <  1:1676584/99‑1 (MQ=255)
                                            tACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcat                                                        >  2:1026805/1‑99 (MQ=255)
                                             aCCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCCGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatc                                                       >  2:273152/1‑99 (MQ=255)
                                             aCCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatc                                                       <  1:393258/99‑1 (MQ=255)
                                             aCCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatc                                                       >  2:3055115/1‑99 (MQ=255)
                                                 aTGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATcc                                                   <  2:1319307/99‑1 (MQ=255)
                                                   gTCGACTGGCATCCAACGCGTAACCAACGTGGGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCa                                                 <  2:357289/99‑1 (MQ=255)
                                                      cACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTa                                              >  1:2107667/1‑99 (MQ=255)
                                                      cACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTa                                              >  1:807236/1‑99 (MQ=255)
                                                       aCTGGGATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTaa                                             <  1:3294212/99‑1 (MQ=255)
                                                       aCTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTaa                                             <  2:1500004/99‑1 (MQ=255)
                                                           gCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCa                                         >  1:1186317/1‑99 (MQ=255)
                                                            cATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAg                                        <  2:2566399/99‑1 (MQ=255)
                                                             aTCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTCGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGc                                       >  2:2954471/1‑99 (MQ=255)
                                                               ccAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCg                                     >  2:1973408/1‑99 (MQ=255)
                                                                cAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGc                                    >  1:2921072/1‑99 (MQ=255)
                                                                      gTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGt                              >  1:2421383/1‑99 (MQ=255)
                                                                        aaCCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGttt                            >  2:2751995/1‑99 (MQ=255)
                                                                          ccAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcg                          >  1:825665/1‑99 (MQ=255)
                                                                           cAACGTGCGCCGCAGCGTATAGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcgg                         <  2:805011/99‑1 (MQ=255)
                                                                           aaaCGTGCGCGGCAGCGTATCGACACGCTGCAGCTTGATAATTTCGTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGCGTTTcgg                         >  2:3176220/2‑99 (MQ=255)
                                                                              cGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcggcgg                      <  2:401093/99‑1 (MQ=255)
                                                                                 gcgcCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGaa                   <  1:1873729/99‑1 (MQ=255)
                                                                                 gcgcCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGaa                   <  1:1357986/99‑1 (MQ=255)
                                                                                  agctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAg                  >  1:939431/5‑99 (MQ=255)
                                                                                  agctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAg                  >  1:118621/5‑99 (MQ=255)
                                                                                   gctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 >  1:1844995/4‑99 (MQ=255)
                                                                                   gccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCGCCGGATTTCTCGACAGCATCCCACCAAGGCAGCCGCTGGAGTTTCGGCGCGAAgg                 <  2:360654/99‑1 (MQ=255)
                                                                                   gccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 <  1:2985371/99‑1 (MQ=255)
                                                                                    ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                >  2:1847868/3‑99 (MQ=255)
                                                                                    ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                >  2:1979909/3‑99 (MQ=255)
                                                                                    ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                >  1:3355518/3‑99 (MQ=255)
                                                                                    ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                <  2:1677489/99‑1 (MQ=255)
                                                                                    ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                <  2:794119/99‑1 (MQ=255)
                                                                                    ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                <  1:555025/99‑1 (MQ=255)
                                                                                     tgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  2:663098/2‑99 (MQ=255)
                                                                                     tgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  1:897145/2‑99 (MQ=255)
                                                                                     tgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  1:314633/2‑99 (MQ=255)
                                                                                      gcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGtt              >  2:1173935/1‑99 (MQ=255)
                                                                                       cAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTg             <  1:2181828/99‑1 (MQ=255)
                                                                                         gCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCa           >  1:3050711/1‑99 (MQ=255)
                                                                                           gTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAAc         >  1:2195449/1‑99 (MQ=255)
                                                                                            tATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACa        >  1:341630/1‑99 (MQ=255)
                                                                                            tATCGACACACTGCAGCGCGATAATATCCTCACCACCAGAATTACCCACATCATCCCACTAAATCAGCCGCTGGAGCTTCGGCGGCAAGGGATGCTACa        >  2:1659598/1‑99 (MQ=255)
                                                                                             aTCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACAt       >  2:2731572/1‑99 (MQ=255)
                                                                                              tCGATACGCTGCGGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATg      >  1:448620/1‑99 (MQ=255)
                                                                                              tCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGCGTTTCGGCGGGAAGGGTTTCAACATg      >  1:2619553/1‑99 (MQ=255)
                                                                                              tCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATg      <  1:696201/99‑1 (MQ=255)
                                                                                                gACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATggg    <  2:2830659/99‑1 (MQ=255)
                                                                                                  cacGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGt  >  2:3377867/1‑99 (MQ=255)
                                                                                                  |                                                                                                  
CTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGT  >  NC_000913/1406000‑1406196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑