BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,439,589	0	G	C	21.7%	406.6 / 114.8	185	intergenic (‑80/+27)	yhdN/rplQ	DUF1992 family protein/50S ribosomal subunit protein L17
Reads supporting (aligned to +/- strand): ref base G (75/69); new base C (23/17); total (99/86)
Fisher's exact test for biased strand distribution p-value = 5.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.68e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 189 total aligned reads displayed.

ACTGGTCAAGTAACCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGCC  >  NC_000913/3439491‑3439687

 cTGGTCAAGTAACCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCggg                                                                                                   >  1:1796453/1‑99 (MQ=255)

     tCAAGTAACCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCgg                                                                                               <  1:1621020/99‑1 (MQ=255)

          tAACCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGtttt                                                                                          <  1:1411348/99‑1 (MQ=255)

           aaCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGttttt                                                                                         <  2:2659489/99‑1 (MQ=255)

           aaCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttt                                                                                         <  1:290002/99‑1 (MQ=255)

           aaCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttt                                                                                         <  1:912443/99‑1 (MQ=255)

           aaCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttt                                                                                         <  1:721583/99‑1 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGCGTACAGCTATTGTAGATAAGTGGGGATGCTACGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                                                                                        >  1:3234162/1‑99 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                                                                                        >  1:2382384/1‑99 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                                                                                        >  1:2607292/1‑99 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGtttttt                                                                                        <  2:2762532/99‑1 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGtttttt                                                                                        <  2:985988/99‑1 (MQ=255)

            aCCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGtttttt                                                                                        <  1:2802032/99‑1 (MQ=255)

             ccACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttttt                                                                                       <  1:1521228/99‑1 (MQ=255)

             ccACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttttt                                                                                       <  2:1052903/99‑1 (MQ=255)

             ccACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCCCGGCGGGttttttt                                                                                       <  1:2467698/99‑1 (MQ=255)

              cacaTAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTa                                                                                      >  1:2989156/1‑99 (MQ=255)

              cacaTAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTa                                                                                      <  1:1118857/99‑1 (MQ=255)

              cacaTAAATACGCCAGGGGATGAAAAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTa                                                                                      <  1:1147289/99‑1 (MQ=255)

                caTAAATACTCCAGGGGATTAACAAAAAGAGTACAGCTATTGTAGATAAGTTGTGATACTACGGGTATAAAAAATCCCGCCCCGGCGGGTTTTTTTata                                                                                    <  1:2948744/99‑3 (MQ=37)

                 aTAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGt                                                                                   <  1:2073852/99‑1 (MQ=255)

                 aTAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGGTTTGTTACGt                                                                                   >  2:1211959/1‑99 (MQ=255)

                  tAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTTTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTGTTACGtt                                                                                  <  2:1298004/99‑1 (MQ=255)

                    aaTACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGc                                                                                <  1:2216922/99‑1 (MQ=255)

                      tACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCtt                                                                              <  1:489592/99‑1 (MQ=255)

                       aCTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTc                                                                             >  1:226972/1‑99 (MQ=255)

                         tCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAg                                                                           <  2:2038426/99‑1 (MQ=255)

                         tCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAg                                                                           >  2:2154423/1‑99 (MQ=255)

                           cAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGAt                                                                         >  1:1702613/1‑99 (MQ=255)

                             ggggATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTa                                                                       <  1:318343/99‑1 (MQ=255)

                              gggATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAc                                                                      >  2:1644612/1‑99 (MQ=255)

                               ggATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAct                                                                     >  1:2411763/1‑99 (MQ=255)

                               ggATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAct                                                                     <  2:473771/99‑1 (MQ=255)

                                gATGAAGAAGAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTActc                                                                    <  1:3406267/99‑1 (MQ=255)

                                gATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTActc                                                                    <  2:1132765/99‑1 (MQ=255)

                                gATGAACAAAAAGACTACCGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTAcac                                                                    <  2:202089/99‑3 (MQ=255)

                                   gAACAAAAAGAGTACAGCTATTGTAGATACGTGGGGATACTACGGGTATCAAAAAACCCGCCTGGGCGGGTTATTTTACGTTGCTTCAGATTATTTTgc                                                                 >  2:1367462/1‑99 (MQ=255)

                                   gAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgc                                                                 <  2:2883800/99‑1 (MQ=255)

                                    aaCAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgca                                                                <  1:264610/99‑1 (MQ=255)

                                     aCAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgcag                                                               >  1:151283/1‑99 (MQ=255)

                                     aCAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgcag                                                               >  2:770645/1‑99 (MQ=255)

                                      cAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGTGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgcagc                                                              >  1:612855/1‑99 (MQ=255)

                                       aaaaaGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTgcagca                                                             <  1:2139176/99‑1 (MQ=255)

                                         aaaGAGTACAGGTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTGCAGAGTAATCTgaagcaac                                                           <  2:2693792/99‑3 (MQ=255)

                                         aaaGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCagcagc                                                           <  1:1502957/99‑1 (MQ=255)

                                         aaaGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCagcagc                                                           >  2:1572420/1‑99 (MQ=255)

                                         aaaGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCagcagc                                                           <  1:361581/99‑1 (MQ=255)

                                              gTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTg                                                      >  1:124200/1‑99 (MQ=255)

                                               tACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGc                                                     <  1:2020180/99‑1 (MQ=255)

                                               tACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGc                                                     >  2:182127/1‑99 (MQ=255)

                                                  aGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCttt                                                  <  2:1871595/99‑1 (MQ=255)

                                                    cTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTtct                                                >  1:2024152/1‑99 (MQ=255)

                                                      aTTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTctct                                              <  1:783427/99‑1 (MQ=255)

                                                      aTTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTctct                                              <  1:2291781/99‑1 (MQ=255)

                                                      aTTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTctct                                              >  2:3304070/1‑99 (MQ=255)

                                                         gTAGATAAGTGGGGATACTACGGGTATAAAAAACCCCGCCGGGGCGTGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGaa                                           <  2:415744/99‑1 (MQ=255)

                                                         gTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGaa                                           >  2:952283/1‑99 (MQ=255)

                                                         gTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGaa                                           <  1:1536103/99‑1 (MQ=255)

                                                         gTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGaa                                           <  2:3425179/99‑1 (MQ=255)

                                                            gATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGa                                        >  1:2773516/1‑99 (MQ=255)

                                                            gATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGa                                        <  1:3071792/99‑1 (MQ=255)

                                                             aTAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGAt                                       >  1:1767655/1‑99 (MQ=255)

                                                                 gTGGGGATACTACGGGTATAAAAAAACCCGTCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAAc                                   <  2:750360/99‑1 (MQ=255)

                                                                 gTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAAc                                   >  2:2484839/1‑99 (MQ=255)

                                                                 gTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTGCTGCTTTCTCTGAACGATCAAc                                   >  2:505838/1‑99 (MQ=255)

                                                                      gATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCt                              >  1:3333796/1‑99 (MQ=255)

                                                                          ctacGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGAt                          <  2:2356436/99‑1 (MQ=255)

                                                                          ctacGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGAt                          <  2:1446296/99‑1 (MQ=255)

                                                                           tacGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATg                         >  1:1883190/1‑99 (MQ=255)

                                                                             cGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTa                       >  1:3152778/1‑99 (MQ=255)

                                                                                gTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGc                    >  1:14683/1‑99 (MQ=255)

                                                                                 cgtaAAAAAACCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGcc                   >  2:2308093/3‑99 (MQ=38)

                                                                                  gtaAAAAAACCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCa                  >  1:852168/2‑99 (MQ=255)

                                                                                  gtaAAAAAACCCGCCCCGGCGGGTTCTTTTACGTTGCTCCAGATTACTCTGCAGCAACTTCTGCTTCCTCTAAACGATCAACCAGCTCGATGTAAGCCa                  >  2:1894044/2‑99 (MQ=37)

                                                                                   taAAAAAACCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCAt                 >  1:1995451/1‑99 (MQ=255)

                                                                                    aaaaaaaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATc                >  1:525209/1‑99 (MQ=255)

                                                                                     aaaaaaCCCGCCCCGGCGGCTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCg               >  1:2715722/1‑99 (MQ=39)

                                                                                      aaaaaCCCGTAGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTTTGCTTTCTCTGAACGGACAACCAGCGTGTTGTAAGCCATCgg              >  2:2402518/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCACCTCGACGTAAGCCATCgg              >  2:2019464/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  1:677130/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  1:2172612/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  1:1817780/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  1:1825194/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  2:1692811/1‑99 (MQ=255)

                                                                                      aaaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTATCTCTGAACGATCAACCAGCTCGATGTAAGCCATCgg              >  2:1778152/1‑99 (MQ=39)

                                                                                       aaaaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGgc             >  2:3091156/1‑99 (MQ=255)

                                                                                       aaaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGgc             >  1:3295884/1‑99 (MQ=255)

                                                                                        aaaCCCGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGGACGATCAACCAGCTCGATGTAAGCCATCGgcg            >  1:3188083/1‑99 (MQ=39)

                                                                                         aaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGgcgc           <  2:1500199/99‑1 (MQ=255)

                                                                                         aaCCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCCCGATGTAAGCCATCGgcgc           <  2:777771/99‑1 (MQ=255)

                                                                                           cccGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGt         <  2:1991586/99‑1 (MQ=255)

                                                                                           cccGCCCCGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGt         >  1:2056722/1‑99 (MQ=255)

                                                                                            ccgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGtt        >  1:2979064/1‑99 (MQ=255)

                                                                                            ccgccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGtt        >  2:2458889/1‑99 (MQ=255)

                                                                                              gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGt      >  1:1297340/1‑99 (MQ=255)

                                                                                              gccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGt      <  1:548820/99‑1 (MQ=255)

                                                                                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTc     <  2:2609130/99‑1 (MQ=255)

                                                                                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTc     <  2:2589597/99‑1 (MQ=255)

                                                                                               ccgGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTc     <  2:56569/99‑1 (MQ=255)

                                                                                                  gggCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGcc  <  2:1747397/99‑1 (MQ=255)

ACTGGTCAAGTAACCACATAAATACTCCAGGGGATGAACAAAAAGAGTACAGCTATTGTAGATAAGTGGGGATACTACGGGTATAAAAAAACCCGCCGGGGCGGGTTTTTTTACGTTGCTTCAGATTACTCTGCAGCAGCTTCTGCTTTCTCTGAACGATCAACCAGCTCGATGTAAGCCATCGGCGCGTTGTCGCC  >  NC_000913/3439491‑3439687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`