BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,277,391	0	C	A	56.4%	‑6.4 / 246.6	174	intergenic (‑8/‑78)	soxS/soxR	superoxide response regulon transcriptional activator; autoregulator/redox‑sensitive transcriptional activator of soxS; autorepressor
Reads supporting (aligned to +/- strand): ref base C (31/44); new base A (42/55); total (74/100)
Fisher's exact test for biased strand distribution p-value = 8.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-03
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 177 total aligned reads displayed.

ATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCC  >  NC_000913/4277293‑4277487

aTTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGc                                                                                                  <  1:2684777/99‑1 (MQ=255)

aTTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGc                                                                                                  >  2:2543978/1‑99 (MQ=255)

  ttttttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGAct                                                                                                <  1:1763906/99‑1 (MQ=255)

      ttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCttt                                                                                            <  1:2983760/99‑1 (MQ=255)

      ttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCttt                                                                                            >  2:507270/1‑99 (MQ=255)

        gCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTc                                                                                          >  1:1399134/1‑99 (MQ=255)

         cGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCa                                                                                         <  1:835885/99‑1 (MQ=255)

         cGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGGCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCa                                                                                         <  2:2815458/99‑1 (MQ=255)

          gACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAg                                                                                        <  1:3289865/99‑1 (MQ=255)

           aCTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAgt                                                                                       <  1:1151132/99‑1 (MQ=255)

               cATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTc                                                                                   <  2:3279188/99‑1 (MQ=255)

                aTCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCa                                                                                  <  2:438107/99‑1 (MQ=255)

                aTCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCa                                                                                  <  2:1040997/99‑1 (MQ=255)

                  cAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGt                                                                                >  1:2501027/1‑99 (MQ=255)

                    aTGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTc                                                                              >  1:4284/1‑99 (MQ=255)

                    aTGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTc                                                                              <  2:726186/99‑1 (MQ=255)

                     tGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCg                                                                             <  1:427188/99‑1 (MQ=255)

                     tGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCg                                                                             >  1:771969/1‑99 (MQ=255)

                      gTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGt                                                                            >  2:2006713/1‑99 (MQ=255)

                       ttAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGtt                                                                           <  1:2583530/99‑1 (MQ=255)

                       ttAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGtt                                                                           >  2:1382984/1‑99 (MQ=255)

                       ttAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGtt                                                                           >  1:718215/1‑99 (MQ=255)

                        tAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTa                                                                          <  2:1021048/99‑1 (MQ=255)

                        tAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTa                                                                          >  1:2549459/1‑99 (MQ=255)

                         aaGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTaa                                                                         >  1:3390310/1‑99 (MQ=255)

                           gCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAAtt                                                                       >  2:1268930/1‑99 (MQ=255)

                            cGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTc                                                                      >  2:278871/1‑99 (MQ=255)

                            cGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTc                                                                      >  2:483033/1‑99 (MQ=255)

                             ggCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCa                                                                     <  1:3408645/99‑1 (MQ=255)

                              gatGGTCAACATGCTCGTCCATCCATGCGATAAGATCCTGCATAATTTTCTGATGGGACATAAATCTGACTCCTTTCACTGTTCAGTTCGTTAATTCAt                                                                    <  2:1187098/97‑1 (MQ=255)

                              gCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCAt                                                                    <  2:261461/99‑1 (MQ=255)

                               cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATc                                                                   >  2:2976606/1‑99 (MQ=255)

                               cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATc                                                                   <  2:3113156/99‑1 (MQ=255)

                                tGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCt                                                                  <  1:2099640/99‑1 (MQ=255)

                                  gTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTTATCTGt                                                                >  2:2234049/1‑99 (MQ=255)

                                   tCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGtt                                                               <  2:219180/99‑1 (MQ=255)

                                     aaTATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                             <  2:2534023/99‑1 (MQ=255)

                                     aaTATGCTCGTCAATCCATGCGATAAGAGCCTGAATAATTGTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                             <  2:1694990/99‑1 (MQ=255)

                                     aaTATGCGCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                             <  2:2654400/99‑1 (MQ=255)

                                        atGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGTGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGa                                                          <  2:2410883/99‑1 (MQ=255)

                                        atGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGa                                                          <  1:2925722/99‑1 (MQ=255)

                                          gCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGt                                                        >  2:2336829/1‑99 (MQ=255)

                                          gCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGt                                                        >  2:600904/1‑99 (MQ=255)

                                            tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGtat                                                      <  1:2037477/99‑1 (MQ=255)

                                                 aaTCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTATTTCATCTGTTGGGGTGTATATTTc                                                 >  1:3124486/1‑99 (MQ=255)

                                                 aaTCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTc                                                 <  2:1356042/99‑1 (MQ=255)

                                                 aaTCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTc                                                 >  1:1982370/1‑99 (MQ=255)

                                                 aaTCCAGGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTc                                                 <  1:634761/99‑1 (MQ=255)

                                                  aTCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGGGTATAATTcc                                                >  2:1389066/1‑99 (MQ=255)

                                                     cATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCa                                             <  1:1346294/99‑1 (MQ=255)

                                                     cATGCGAAAAGATCCTAAATAATTTTCTGATGGAACATAAATCTGAATCTTTTCAGTGTTCAGTTCGTTACTTAATCTGTTGGGGAGTATAATTCTTCa                                             >  2:1910631/1‑99 (MQ=255)

                                                      aTGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCaa                                            >  1:33470/1‑99 (MQ=255)

                                                      aTGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCaa                                            <  2:667057/99‑1 (MQ=255)

                                                      aTGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCaa                                            <  1:2163357/99‑1 (MQ=255)

                                                      aTGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCaa                                            <  1:2325092/99‑1 (MQ=255)

                                                       tGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAg                                           <  1:1762811/99‑1 (MQ=255)

                                                       tGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAg                                           <  1:610883/99‑1 (MQ=255)

                                                       tGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAg                                           <  1:2362593/99‑1 (MQ=255)

                                                       tGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAg                                           >  1:2522371/1‑99 (MQ=255)

                                                          gATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTa                                        >  2:615577/1‑99 (MQ=255)

                                                          gATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTa                                        >  2:615320/1‑99 (MQ=255)

                                                           aTAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTaa                                       >  1:2783185/1‑99 (MQ=255)

                                                            tAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAAc                                      <  2:284514/99‑1 (MQ=255)

                                                              aGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACtt                                    <  1:1941359/99‑1 (MQ=255)

                                                              aGATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACtt                                    <  1:1549207/99‑1 (MQ=255)

                                                               gATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTg                                   <  1:1639385/99‑1 (MQ=255)

                                                               gATCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTg                                   >  2:2123600/1‑99 (MQ=255)

                                                                aTCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGa                                  >  2:1840227/1‑99 (MQ=255)

                                                                 tCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAg                                 <  2:3172913/99‑1 (MQ=255)

                                                                 tCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAg                                 <  2:1877975/99‑1 (MQ=255)

                                                                 tCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAg                                 <  1:1073866/99‑1 (MQ=255)

                                                                 tCCTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAg                                 <  2:1512831/99‑1 (MQ=255)

                                                                  ccTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAgg                                <  2:3400105/99‑1 (MQ=255)

                                                                  ccTGAATAATTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAgg                                <  2:2879644/99‑1 (MQ=255)

                                                                   cTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGt                               >  1:874520/1‑99 (MQ=255)

                                                                    tGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTa                              >  2:2520193/1‑99 (MQ=255)

                                                                      aataatTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTaaa                            <  1:981751/99‑1 (MQ=255)

                                                                      aataatTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTaaa                            >  1:206467/1‑99 (MQ=255)

                                                                      aataatTTTCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTaaa                            <  1:551018/99‑1 (MQ=255)

                                                                       ataatTTTCTAATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAGGTTAACTTGAGGTAAAg                           <  2:752412/99‑1 (MQ=255)

                                                                        taatTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGc                          >  2:472599/1‑99 (MQ=255)

                                                                         aatTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCg                         >  1:1955046/1‑99 (MQ=255)

                                                                           ttttCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGAt                       <  1:2536946/99‑1 (MQ=255)

                                                                           ttttCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGAt                       >  1:273974/1‑99 (MQ=255)

                                                                           ttttCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGAt                       >  2:1373058/1‑99 (MQ=255)

                                                                            tttCTGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGAtt                      >  1:2601958/1‑99 (MQ=255)

                                                                             ttCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGAttt                     >  2:2359821/1‑99 (MQ=255)

                                                                               cTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTAt                   >  1:542502/1‑99 (MQ=255)

                                                                                tGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATg                  <  1:3213681/99‑1 (MQ=255)

                                                                                tGATGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATg                  <  1:45802/99‑1 (MQ=255)

                                                                                 gATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATgg                 <  1:1390794/99‑1 (MQ=255)

                                                                                  aTGGGACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGa                >  1:1101683/1‑99 (MQ=255)

                                                                                    gggACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaa              <  2:386722/99‑1 (MQ=255)

                                                                                     ggACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa             <  1:251572/99‑1 (MQ=255)

                                                                                     ggACATAAATCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa             <  1:2430682/99‑1 (MQ=255)

                                                                                       aCATAAATCTGACTCTTTTCAGTGTTCAGTTCGATAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGCTTTAAGGAAAAGa           >  2:1466457/1‑99 (MQ=255)

                                                                                        cATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGaa          <  2:1492452/99‑1 (MQ=255)

                                                                                          tAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAAt        <  2:1661667/99‑1 (MQ=255)

                                                                                           aaaTCTGACTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAAtt       >  1:2888665/1‑99 (MQ=255)

                                                                                           aaaTCTGACTCTTTTCAGTGTTCAGTTCGATAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAAtt       >  1:508965/1‑99 (MQ=255)

ATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCC  >  NC_000913/4277293‑4277487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`