Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,332,9860GA66.1% 124.7 / 114.4 125A96V (GCG→GTG) basSsensory histidine kinase in two‑component regulatory system with BasR
Reads supporting (aligned to +/- strand):  ref base G (15/27);  new base A (46/36);  total (62/63)
Fisher's exact test for biased strand distribution p-value = 3.78e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.34e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

CGCCGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTGGCGACCGCC  >  NC_000913/4332889‑4333081
                                                                                                 |                                                                                               
cGCCGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGc                                                                                                <  1:2719281/99‑1 (MQ=255)
cGCCGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGc                                                                                                <  1:2718775/99‑1 (MQ=255)
cGCCGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGc                                                                                                <  2:1594327/99‑1 (MQ=255)
   cGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAg                                                                                             >  1:2748833/1‑99 (MQ=255)
        ccaccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAgcgggc                                                                                        >  2:3313668/1‑99 (MQ=255)
         caccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAgcgggcg                                                                                       >  2:1784714/1‑99 (MQ=255)
         caccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAgcgggcg                                                                                       >  2:2214628/1‑99 (MQ=255)
         caccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCAACAgcgggcg                                                                                       >  2:2959361/1‑99 (MQ=255)
          accGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAgcgggcgg                                                                                      <  1:3096273/99‑1 (MQ=255)
          accGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAgcgggcgg                                                                                      >  1:921788/1‑99 (MQ=255)
           ccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGcgggcggg                                                                                     <  1:745761/99‑1 (MQ=255)
           ccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGcgggcggg                                                                                     <  1:1760716/99‑1 (MQ=255)
           ccGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGcgggcggg                                                                                     >  1:473594/1‑99 (MQ=255)
            cGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGt                                                                                    >  1:1455556/1‑99 (MQ=255)
            cGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGt                                                                                    >  2:2044095/1‑99 (MQ=255)
             gCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTg                                                                                   >  2:1671981/1‑99 (MQ=255)
              cTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGa                                                                                  >  2:3376408/1‑99 (MQ=255)
               ttCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGAt                                                                                 <  2:1895034/99‑1 (MQ=255)
               ttCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGAt                                                                                 >  1:2352874/1‑99 (MQ=255)
               ttCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGAt                                                                                 <  2:491903/99‑1 (MQ=255)
               ttCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGAt                                                                                 >  1:2606615/1‑99 (MQ=255)
                 cGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATgc                                                                               >  1:760712/1‑99 (MQ=255)
                 cGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATgc                                                                               <  1:1651544/99‑1 (MQ=255)
                  gATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATgcg                                                                              >  1:3364782/1‑99 (MQ=255)
                   aTTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATgcgg                                                                             >  1:1017671/1‑99 (MQ=255)
                    tttCGAGGGTGGCGCTGTGAATGGCGTTGGGCGTTAAGTTGTCGGCGCTGCGGGCTTCCAGCTCGTTTTGCAGCTCCACCAGCGGCCGGGTGATgcggc                                                                            <  2:440659/99‑1 (MQ=255)
                     ttCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCTGCTCCGCCAGCGGGCGGGTGATgcggcg                                                                           <  1:2263326/99‑1 (MQ=255)
                      tCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGt                                                                          <  1:2778198/99‑1 (MQ=255)
                      tCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGt                                                                          <  2:1997308/99‑1 (MQ=255)
                       cGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTa                                                                         <  1:983135/99‑1 (MQ=255)
                        gAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTAc                                                                        >  1:261827/1‑99 (MQ=255)
                        gAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTAc                                                                        >  1:391922/1‑99 (MQ=255)
                        gAGGGTGGCGATGTGAATGGCAATGAGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTACGCCAGCGGGCGGGTTATGCGGCGTAc                                                                        >  2:954605/1‑99 (MQ=255)
                          gggTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCg                                                                      <  1:190784/99‑1 (MQ=255)
                          gggTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTACAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCg                                                                      <  1:2784095/99‑1 (MQ=255)
                           ggTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCAGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCCGCGTACCGc                                                                     >  2:3347700/1‑99 (MQ=255)
                           ggTGGCGCTGTGAATGGCAATGGGCGTCAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTCTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGc                                                                     <  1:3013497/99‑1 (MQ=255)
                             tGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCt                                                                   <  1:3434921/99‑1 (MQ=255)
                             tGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCt                                                                   <  2:982434/99‑1 (MQ=255)
                                  cTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAg                                                              <  2:2250771/99‑1 (MQ=255)
                                   tgtgAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGc                                                             <  1:1537570/99‑1 (MQ=255)
                                   tgtgAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGc                                                             <  2:2389158/99‑1 (MQ=255)
                                   ggtgAATGGCTATGGGCGTTAAGTTGTCGGCGGTGAGCGCTTCCAGCTCGTTTTGCAGCTCCACCAGCGGGGGGGTGATGCGGCGTAACGCCTTATAGc                                                             <  2:2423452/98‑1 (MQ=255)
                                    gtgAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTTCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCa                                                            <  1:495214/99‑1 (MQ=255)
                                    gtgAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCa                                                            <  2:496834/99‑1 (MQ=255)
                                      gAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGa                                                          >  1:2119974/1‑99 (MQ=255)
                                      gAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGa                                                          <  1:802434/99‑1 (MQ=255)
                                         tGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATaa                                                       >  2:2214296/1‑99 (MQ=255)
                                           gCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGTTCTTTTTGCAGCTCCGCCAGCGGGAGGGTGATGCGGCGTACCGCCTGATAGCCGATAAAt                                                     <  2:1551205/99‑1 (MQ=255)
                                           gCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAAt                                                     <  1:1921953/99‑1 (MQ=255)
                                            cAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATa                                                    <  2:1002785/99‑1 (MQ=255)
                                            cAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATa                                                    >  2:2914865/1‑99 (MQ=255)
                                            cAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATa                                                    >  2:2948359/1‑99 (MQ=255)
                                              aTGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAAGAGc                                                  >  1:3463004/1‑99 (MQ=255)
                                               tGGGCGTTAAGTTGTCGGCGGTGCGCGCTTACAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCg                                                 <  1:1028555/99‑1 (MQ=255)
                                                  gCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCa                                              >  1:2909593/1‑99 (MQ=255)
                                                  gCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCa                                              >  1:2406717/1‑99 (MQ=255)
                                                  gCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCa                                              <  2:1768790/99‑1 (MQ=255)
                                                    gTTAAGTTGTCGGCGGTGCGAGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGACGGGTGATGCGGCGTACCGCCTGATAGCATATAAATAGCGTCAgg                                            >  2:3263706/1‑99 (MQ=255)
                                                         gTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGAc                                       >  2:1065954/1‑99 (MQ=255)
                                                         gTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGAc                                       >  2:77130/1‑99 (MQ=255)
                                                         gTTGTCGGCGGTGCGCGCCTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGAc                                       <  1:1503872/99‑1 (MQ=255)
                                                           tGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCa                                     >  1:487607/1‑99 (MQ=255)
                                                           tGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCa                                     >  1:3008385/1‑99 (MQ=255)
                                                             tCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATa                                   <  1:1805219/99‑1 (MQ=255)
                                                             tCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCAtt                                   >  2:3105340/1‑98 (MQ=255)
                                                              cggcggTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATaa                                  >  1:1243986/1‑99 (MQ=255)
                                                              cggcggTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATaa                                  <  1:2208307/99‑1 (MQ=255)
                                                              cggcggTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATaa                                  <  1:2598767/99‑1 (MQ=255)
                                                                gcggTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAg                                <  2:1604356/99‑1 (MQ=255)
                                                                  ggTGCGCGCTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGAc                              <  2:906767/99‑1 (MQ=255)
                                                                    tGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGc                            >  2:1210200/1‑99 (MQ=255)
                                                                     gcgcgcTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGcc                           >  2:683144/1‑99 (MQ=255)
                                                                      cgcgcTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCg                          <  1:1741179/99‑1 (MQ=255)
                                                                       gcgcTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCgg                         >  2:3113922/1‑99 (MQ=255)
                                                                        cgcTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCggg                        <  1:1453027/99‑1 (MQ=255)
                                                                        cgcTTCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCggg                        <  1:2905700/99‑1 (MQ=255)
                                                                           ttCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGAc                     >  2:2945932/1‑99 (MQ=255)
                                                                           ttCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGAGTGATGCGGCGTACCGCCGGATAGCAGATAAATAGCGTCGGGCTGACCATAAAGACGCCGGGGAc                     >  1:3230344/1‑99 (MQ=255)
                                                                           ttCCAGCTCTTTTTGCAGCTCCACCAGCGGGCGAGTGATGCGGCGTACCGCCAGATAGCAGATAAATAGCGTCTGGCTGACCATAAAGACGCCGGGGAc                     >  1:3230636/1‑99 (MQ=255)
                                                                             ccAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACaa                   >  1:3042729/1‑99 (MQ=255)
                                                                              cAGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAAt                  <  1:879014/99‑1 (MQ=255)
                                                                               aGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCGTCAAGACGCCGGGGACAATc                 >  1:3260004/1‑99 (MQ=255)
                                                                               aGCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATc                 >  1:2832644/1‑99 (MQ=255)
                                                                                gCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCa                <  1:174877/99‑1 (MQ=255)
                                                                                gCTCTTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCa                >  1:3186781/1‑99 (MQ=255)
                                                                                actcaTTTTGCAGGTCCACTAGCCGGCGGGTGATGCAGCATACAGCCTGAGAGCAGATAAATAGCGTCAGGCTGACCATAAACACGAAGGGGACAAtaa                <  2:2060499/98‑3 (MQ=255)
                                                                                 ctctTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAg               <  1:3444172/99‑1 (MQ=255)
                                                                                 ctctTTTTGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAg               >  2:2152303/1‑99 (MQ=255)
                                                                                    tttttGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCt            >  1:2890621/1‑99 (MQ=255)
                                                                                    tttttGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCt            >  1:3419785/1‑99 (MQ=255)
                                                                                    tttttGCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCt            >  1:2755673/1‑99 (MQ=255)
                                                                                     ttttGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTg           <  2:3355662/99‑1 (MQ=255)
                                                                                     ttttGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTg           <  1:2734377/99‑1 (MQ=255)
                                                                                      tttGCAGCTCTGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATACATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTgg          <  2:2428251/99‑1 (MQ=255)
                                                                                      tttGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTgg          <  2:2096519/99‑1 (MQ=255)
                                                                                         gCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTGGCGa       >  1:2606561/1‑99 (MQ=255)
                                                                                         gCAGCTCCACCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGACTGGCGa       >  1:1226333/1‑99 (MQ=255)
                                                                                           aGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTGGCGAcc     >  1:480498/1‑99 (MQ=255)
                                                                                             cTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTGGCGACCGc   >  1:424052/1‑99 (MQ=255)
                                                                                                 |                                                                                               
CGCCGAAACCACCGCTTCGATTTCGAGGGTGGCGCTGTGAATGGCAATGGGCGTTAAGTTGTCGGCGGTGCGCGCTTCCAGCTCTTTTTGCAGCTCCGCCAGCGGGCGGGTGATGCGGCGTACCGCCTGATAGCAGATAAATAGCGTCAGGCTGACCATAAAGACGCCGGGGACAATCAGGCTGGCGACCGCC  >  NC_000913/4332889‑4333081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑