Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 433,634 | 0 | T | G | 35.2% | 82.2 / 23.4 | 91 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
Reads supporting (aligned to +/- strand): ref base T (14/43); new base G (30/1); total (45/46) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.84e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TTTCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCG > NC_000913/433400‑433848 | tttCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGTCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGGGAACACCATGCCGCAGTACCCGCGTTGCG‑TCTCGC‑GGGTGaaa > 2:1955517/1‑239 (MQ=255) tttCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGCAGTACACGCGTTGCG‑TATGGC‑GGGTGgaa > 1:1272308/1‑239 (MQ=255) tttCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TCTGGC‑GGGTGaaa > 1:1544732/1‑239 (MQ=255) tttCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGaaa > 1:459811/1‑239 (MQ=255) tttCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGaaa > 1:1676763/1‑239 (MQ=255) aaGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGGGAACCCCATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAGca > 1:2290067/1‑238 (MQ=255) atCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAGAAAACCcaacg > 1:63712/1‑237 (MQ=255) aggAATTGGGCGAAGAGCTCGCGCGCCTGGAGGACTAAGCCGGGCAGGAGGATTTTTACATGGCGCGGGCGCTAAAGCGGGCGCAACGAGGACTTTTTCCCCCGCACCCCACCCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTCCCACCAACGTGCGGGTGAACCACATGCCGAAGTCCCCGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCg < 2:2290067/237‑1 (MQ=255) aTTTGCGGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGAGGAGTATTACATGGCGCGGGCGCAAAAGCTGGCGCAACGAGGACGTTTTCCCACGCCTCCCACCCCGAATGTCGGGGGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGTTTCCCCCCAACGTGCGGGTGAACCACATGCCGAAGTACACGGGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGAc < 2:806861/237‑1 (MQ=255) tttGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAGCCAAAAGGGCGGCCg > 1:2020255/1‑238 (MQ=255) tttGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCAGAAGGACACGCGTTGCG‑TATGGC‑GGGCGAAAAAGCCAAAAGCGAGACCg > 2:1935651/1‑238 (MQ=255) tgggCGAAGAGATCGCGCGCATGAGGGACGAGGCCGGGCGGGACGGGTATACAAGGGCGGGGGCGCTAAAGCGGGCGCAAGGAGGACGATTTCCCACGCATCCCACCCCGAAGGTGGGGTGCGTCATTGTAAAAGAGGGCAAAATGGTCGGTGAAGTTTACCACCACCGTGCGGGTGAACCACTGGCGGAAGTCCCCGCGTTGCG‑TAGGGG‑GGGTGAAAAAGCCAAAGGTGCGACCGcc < 2:1893563/237‑1 (MQ=255) tGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAACCAAAAGGGCGACCGccc > 1:629066/1‑238 (MQ=255) agagATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGGGAAGGTTACCACCAACGTGCGGGTGAACAACAGGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAACCCAAAGTGGGAcccactcgttac > 2:2094346/1‑229 (MQ=255) gcgcCTGAGAGACTAAGCCGGGCAGGAGGAGTATTACGTGGCGCGGGCGCTAAAGCTGGCGCAAGGAGTCGGTTTTCCCCCGCACCCCAACCCAAATGTGGGGTGCGTCATTGTCAAAGAGGGCGAAATTGTCGGTGAGGTTTCCCACCAACGGGCGGGTAAACCACAGGCCGAAGTACCCGCGTTGCG‑TATGGG‑GGGTAAAAAACCAAAAGGTGCGACCGCCTATGTCACA‑CTCGaa < 2:1413410/238‑1 (MQ=255) gggaCTAAGCCGTGCAGGACGATTATTACATGGCGCGGGCGCAAAGGCGGGCGAAACGAGGACGTTTTCCCCCGCACCCCACCCCGAATGTGGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCCCCAACGTGCGGGTGACCCACATGCCGAAGTACACGCTTTGCG‑TATGGG‑GGGTAAAAAAGCAAAGGGTGCGACCGCCTATGTCACA‑CTCg < 2:279387/227‑1 (MQ=255) cTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAAGGGGGACCGCCCATTGTACA‑CTCGAACCCTGTAAccct > 1:1699916/1‑236 (MQ=255) aaGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGcc > 1:1509276/1‑194 (MQ=255) aaGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGcc < 2:1509276/194‑1 (MQ=255) cGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAg > 1:279387/1‑228 (MQ=255) gTGCGGGACGGTTAATACAGGGCGCGGGCTCTAAGGCGGGCGCAACGAGGGCGTTTTCCCACACATCCCAACCCAAATGGCGGGGGCGGCATTGTAAAAGATGGGGAAATTGTCGGTGAGGGTTACCCCCAACGTGGGGGTGACCCACATGCCGAAGTACGCGCGTTGCG‑TAGGGC‑GGGTGAAAAACCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTc < 2:1544732/238‑1 (MQ=255) aGGACGGGTTTTACAGGGCCGGGGCTGTAAAGCTGGCGCAACGAGGACGTTTAACCCCGCATCCAAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAGGGTTCCCCCCAACGTGGGGGTGACCCACATGCCGAAGTACACGCGTTGCT‑TATGGG‑GGGTAAAAAAGCAAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTa < 2:1836599/222‑1 (MQ=255) agggAGTATTACATGGCGCGGGCGCAAAAGCGGGCGCAACGAGGACGTTTTACCACGCACCCCAACCCGAATGGCGGGTGCGTCATTGTAAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAAGGTGCGGGTGAACCACAGGCCGAAGTCCACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTa < 2:33809/232‑1 (MQ=255) cGAGTATTACGGGGCGCGGGCGCTAACGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTGGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCCCCAACGTGCGGGTGACCCACAGGCAGAAGTCCACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 2:1828790/238‑1 (MQ=255) cGAATATTACTTGGCGGGGGCGCTAAAGCTGGCCAAACGGGGCCTTTTTCCCACCCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTAAAGGTTCCCACCAACGGGGGGGTGAACCACATGCCGAAGTACCCGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 2:2020255/238‑1 (MQ=255) aGTATTACAGGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTCCCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTc < 1:1612482/228‑1 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAACCAAAAGGGCGACCGCCTCGGCGCCA‑CTCCAACCCCGGAGCACACATGGTCGTAAGCCACCgc > 1:2217828/1‑238 (MQ=255) tATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTg < 1:2093901/184‑1 (MQ=255) tATTACATGGCGCGGGCGCAAAAGCGGGCGCAACGAGGGCGTTTTACCACGCACCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCAAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTAAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTAAAAAACCCAAAGGTCCGACCGCCTATGTCACA‑CTCGAACCCTGTAGc < 2:348749/216‑1 (MQ=255) agcacgtGGCGCGGCCGCAAAGGCGGGCGCAACGGAGCCTTTTTCCCACGCCACCCACCCCGAAGGTCGGGTGCGTCATTGTCAAAGAGGGCGAATTTGTCGGTGAAGGTTACCACCAGCGGGGGGGTGACCCACATGCCGAAGTACACGCGTTGCG‑TATGGG‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:2258575/232‑1 (MQ=255) ttACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAAGTGCGACCGCCTATTTCACA‑CTCCAACCCTGTAGCCACAATgg > 1:1836599/1‑222 (MQ=255) aCATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAGCCAAAGGGGGGACCGCCCATGTCACA‑CTCGAACCCCGTAGCCATCATGGACGTACGCCAcccg > 1:38809/1‑232 (MQ=255) ggCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCCCCCATGTCCCA‑CCCGAACCCTGTAGCCATCATGGGCGTACCCCACCCTg > 1:33809/1‑231 (MQ=255) ggCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCCCCCATGTCACA‑CCCGAACCCCGTAGCCATCAAGGTGGTACGCCCCCCAGCtgtg > 1:586813/1‑236 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGCGGGGGGAAAAAACCAAAGGT‑CGACCCCCtg > 2:2093901/1‑183 (MQ=255) cgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGACAAAGGGGCGACCGCCTATGTCACA‑CTCGAAACCTGTAGGCATCATGGTCTGACCCCACCGGGCGGTGGCGCaa > 1:2197743/1‑237 (MQ=255) cgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAACCCAAAGGGGCGCCCGCCTATGTCACA‑CTCGAACCCCGTAGCCATCATGGTCGGACGCCACCGTGCTGCGACGCAc > 1:777467/1‑238 (MQ=255) gcgcTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAAGTGCGACCGCCTATGTCACA‑CTCGAACCCCGTAGCCATCATGGGCGGACGCCACCGTGCTGGTACGCACTCa > 1:1266071/1‑238 (MQ=255) gTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCCCAGGCCGAAGTACCCGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGt < 1:442197/157‑1 (MQ=255) cccgccATCCCACCCCGAATGTCGGGTGCGTCAGTGTAAAAGAGGGCGAAATGGGCGGTGAAGGTTCCCACCACCGTGCGGGGAAACCACATGCCGAGGTACCCGGTTTGCG‑TATGGC‑GGGTGAAAAAGCAAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCg < 2:629066/234‑1 (MQ=255) gCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAACCAAAGGGGCGGCCGCCCCTGTcaccaccgaa > 2:442197/1‑150 (MQ=255) cATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGACGCACTCATCGCCCCCGGCGTAGCGCGCGGGGTTGCCTCCATGCa > 1:847998/1‑239 (MQ=255) accccaacccaaATTGCGGGGGGGTATATGTAAAAGATGGGGAAATTGTCGGTGAAGGTTACCCCCAACGTGGGGGGAAACCACAGGCAGAAGTACCCGGGTTGCG‑TATGGG‑GGGGAAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:670555/236‑1 (MQ=255) aTCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGAcc < 1:61692/137‑1 (MQ=255) aaCCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAACCAAAGGTGCGACCGCCCATGTCACA‑CCCCAACCCCGTAGCCATCCTGGTCGTACGCCCCCCGTCTGTGCCGCACCCATCGCCCCCGGCGTAGCGCGCGCGGTTGCCCCCGTGCCAGATc > 2:2119153/1‑238 (MQ=255) gAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAACCAAAAGGGGGACCCCCCATGTca > 2:61692/1‑137 (MQ=255) aaTGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAACCAAAAGGGCGACCCCCCATGTCCCACCCCAAACCCTTAACCCACCA‑GGGCGTCACCCACCGCGCGGTGAGGCCCCCACCCCCGCCTGCGTAGCGGGCGGTGGTGCCTCGATTGACGATccccacc > 2:1268621/1‑233 (MQ=255) aTGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAACCAAAGGTGCGACCGCCCATGTCACA‑CTCGAACCCCGTAGCCACCATGGTCGTACGCCACCGTGCTGTGACGCACTCCTCGCCCCTGGCGGCGCGCGCGGGGTGTCCTCCATGCCAGATCCCAAccc > 2:2081115/1‑238 (MQ=255) tgtgGGGTGCGTCATTGGAAAAGTGTGCGAAATGTGCGGTGGAGGTTACCACCAGCGTGCGGGTGACCCACAGGCGGAGGTACACGTGTAGCG‑TATGGG‑GGGTGAAAAACCAAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGc < 2:1326779/239‑1 (MQ=255) atggacAAAGAGGGCAAATGTGGCGGTGAGGGTCACCGCAAAGGGGGGGGAAAACCACAGGCCGAAGTACCCGCGGTGCG‑TAGGGG‑GGGTAAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGc < 2:38809/233‑1 (MQ=255) ttGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCGCATGCCGAAGTACACGCGTTGCG‑TAGGGC‑GGGTGAAAAAGCCAAAGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGt < 1:1268621/239‑1 (MQ=255) ttGACAAAGATGGAGAAATTGTCGGTGAAGGTTCCCACCAAGGGGCGGGTGAACCACATGCCGAAGTACCCGGGTTGCG‑TATGGC‑GGGTGAAAAAGCAAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGt < 2:847998/239‑1 (MQ=255) tttCAAGGATGCCGAAATTGTCGGTGAGGGTTCCCGCCAACGTGCGGGTGACCCACATGCCGAAGTACACGCGTTGCG‑TAGGGC‑GGGTGAAAAAGCCAAAGGTGCGTCCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 1:1529267/201‑1 (MQ=255) tCAAAGATGGCGAAATTGTCGGTGAGGGTTACCCCCAACGGGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAGGGTGCGCCCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGt < 2:427380/193‑1 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGt < 2:1376321/107‑1 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGt > 1:1376321/1‑107 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAACCAAAAGTGCGGCCGCCCCTGTCACC‑CCCCAACCCCGTAGACATCACGGGCGTACCCCCCCGTGCTGTGTCGCCCCCACCGCCCCCCGCGCACCGCGCGGGGTTGCCCTCATGCACGAGCCCACACCCCACGTCGCCGGGCgggggggttact > 2:1471686/1‑230 (MQ=255) ggCGAAATTGTCGGGGAGGGTTACCCCCAACGGGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 1:37367/193‑1 (MQ=255) cGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGGGTAGCGCGCGGGGTTGCCTCg > 1:427380/1‑193 (MQ=255) ttGTCGGTGAAGGTGACCACCAACGTGCGGGTGAACCACATGCCGAAGTACCCGCGTTGCG‑TATGGC‑GGGTAAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCaa < 1:2081115/239‑1 (MQ=255) tCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAACCAAAGGGGCGACCGCCCATGTCACC‑CCCGAAACCCGTAGCCACCATGGGCGTACGCCACCGTGCTGTGACGCACCCATCGCCGCTGGCGTAGCGCGCGGGGTTGCCCCGCTggcaga > 2:37367/1‑188 (MQ=255) gTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGAACCCGCTTTGCG‑TATGGC‑GGGTAAAAAAGCCAAAGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTa < 1:1740907/111‑1 (MQ=255) agAAGGTTACCACAAGCGTGCGGGTGACCCACATGCCGAAGTACCCGCTTGGCG‑TAGGGC‑GGGTGAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGt < 2:881786/108‑1 (MQ=255) ccaccaACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGTGCGACCCCCCATGTCACA‑CTCGAACCCCGTAGGCAACATgg > 2:1740907/1‑111 (MQ=255) caccaACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGGAAAAGCCAAAGGTGGGACCGCCCATGTCCCA‑CTCGGACCCTGTAGCCAACATg > 1:881786/1‑109 (MQ=255) aCGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAACCAAAAGGGCGAACGCCCATg > 1:1204498/1‑77 (MQ=255) ggggggggTGACCCACAGGCCAAAGTCACCGCGTTGCG‑TAGGGC‑GGGTGAAAAAGCAAAAGGGGCGCCCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 1:350098/234‑1 (MQ=255) cGTGCGGGTGAACACCAGGCCGAAGTCCCCGCGTTGCG‑AATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 1:1261089/239‑1 (MQ=255) gCGGGAGACCCACATGCCAAAGGACA‑GCGGTGGGTTAGGGA‑GGGTAAAAAACCCAATGGGCCAACCGCCTATTTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACg < 2:178805/238‑1 (MQ=255) ggggGAACCACAGGCCGAAGTACACGCTTTGCG‑TATGGC‑GGGTAAAAAAGCCAAGGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGc < 1:1280923/238‑1 (MQ=255) gggTAACCCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTAAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTa < 2:2247044/89‑1 (MQ=255) gtaaaCCCCAGGCAGAAGTACCCGCGTTGGG‑GATGGC‑GGTAAAAAAAGCCAAAGGGGCGACCGCCTATGTCGCA‑CTCGAACCCTGTAGCCATCATGGTCGTACg < 1:2058003/101‑1 (MQ=255) gTGAACCACATGCCGAAGTACACGCGTTGCG‑TTTGGG‑GGGTAAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:1928937/112‑1 (MQ=255) aaCCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGt < 2:1237890/67‑1 (MQ=255) aaCCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGTGCGACCGCCTATGt > 1:1237890/1‑67 (MQ=255) caTGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGGGCGACCCCCTATGTCACA‑ATCGAACCCTGTAACCATCATgg > 1:2247044/1‑89 (MQ=255) aTGCCGAAGTACCCGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCcatc < 2:320081/84‑1 (MQ=255) tGCCGAAGTCCGCGCGTTGCG‑TAGGGG‑GGGTGAAAAAGCCAAGGGGGCGGCCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTg < 1:46666/239‑1 (MQ=255) tGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGGAAAAGACAAAAGGGCGGACCCCTATTTCACA‑CACGAACCCTGGAGCCCTCATTGTCGTACACCACCGTGCt > 2:2058003/1‑104 (MQ=255) tGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGGAGCCATTATGGTCGTACGCCACCGTGCTGTGACGCa > 1:1928937/1‑112 (MQ=255) tGCCGAAGTACACGCGTTGCG‑TAGGGC‑GGGTAAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:1108339/97‑1 (MQ=255) ggCCGAAGTACACGCGTTGGG‑TATGGG‑GGGTGAAAAAGCAAAGGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGc < 2:221903/173‑1 (MQ=255) gCCGAAGTCCCCGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAGGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 2:144873/145‑1 (MQ=255) tACACGGGTTGCG‑TAGGGC‑GGGTAAAAAACCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGt < 1:695502/133‑1 (MQ=255) tACACGCGTTGCG‑TATGGG‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:509826/89‑1 (MQ=255) acacGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGGCGTAc > 1:320081/1‑84 (MQ=255) cacGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCCCCCATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGGACGCCACCGTGCtgtg > 2:1108339/1‑97 (MQ=255) cacGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGGCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGa > 1:221903/1‑174 (MQ=255) acGCGTTGCG‑TATGGC‑GGGGGAAAAAGCCAAAGGGGCGACCGCCTATTTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGa > 1:144873/1‑145 (MQ=255) gtgtggctaggggC‑GGGAGAAACAGCAAAGGGGGCGACCGCCTATGTCACA‑CTCGAACCCTGTGGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCg < 2:777467/221‑1 (MQ=255) gCG‑TATGGC‑GGGGGAAAAAGCCAAAGGGGCGACCCCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGACGCACCCATCGCCCCTGGCGTAGCGCGCGGGGTTGCCTCGATg > 2:695502/1‑133 (MQ=255) | TTTCGAAGATATCAAAGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCG‑TATGGC‑GGGTGAAAAAGCCAAAGGTGCGACCGCCTATGTCACA‑CTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCG > NC_000913/433400‑433848 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |