Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 193,432 | 0 | T | G | 70.2% | 108.2 / 87.9 | 84 | intergenic (+3/‑89) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
Reads supporting (aligned to +/- strand): ref base T (11/14); new base G (30/29); total (41/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CGTCGTAAAGATCTGACCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCGCATGGTAGAACAGTGCCTGGAATTCTCT > NC_000913/193196‑193670 | cgtcgtAAAGATCTGACCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGAGGAACTGATGCAGTTCAGAttttt > 2:743049/1‑237 (MQ=255) tGACCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACaaaaa < 2:1151048/239‑1 (MQ=255) aCCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGCTTGCTTGAACGACAAAAAc > 1:698658/1‑238 (MQ=255) aCCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAAc > 2:14661/1‑238 (MQ=255) aaTCGTTCGTGGTGAAGCAGAACAAGGGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCt < 1:632218/239‑1 (MQ=255) aaTCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCt < 2:1176700/239‑1 (MQ=255) tcgtGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTa < 1:631630/238‑1 (MQ=255) cgtGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGa < 1:989261/239‑1 (MQ=255) aaCAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCg > 1:699009/1‑239 (MQ=255) gcgcGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTgg > 2:662886/1‑239 (MQ=255) gcgcGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGAACGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCGTGAACGACAAAAACGCCGAACAGGAGATCCTTGCGGATCg > 1:1050273/1‑234 (MQ=255) cgcgTGTTGCATTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGc < 2:390531/235‑1 (MQ=255) gCAGTACGTAACGTGCGTCGTGACGCGAACGAGAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGtttt < 2:890935/239‑1 (MQ=255) gTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCt > 2:530328/1‑239 (MQ=255) aCGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCttt < 1:662886/239‑1 (MQ=255) cGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCCCAGTAGATCCTTGCGGATCGGCTGGCGGCCGttttcgttt > 2:569269/1‑234 (MQ=255) cgtcgtGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTAt > 1:293324/1‑233 (MQ=255) gtcgtGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAAcg < 2:510709/184‑1 (MQ=255) gtcgtGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAAcg > 1:510709/1‑184 (MQ=255) gtcgtGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGtct < 1:1030639/239‑1 (MQ=255) tcgtGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCttt < 1:442927/227‑1 (MQ=255) aaCGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGGGG‑GGGTTTGCttttttttttttt > 2:442927/1‑222 (MQ=255) cAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCt < 2:900950/173‑1 (MQ=255) cAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCt > 1:900950/1‑173 (MQ=255) aGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAt < 1:212084/231‑1 (MQ=255) aaGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCa > 2:422978/1‑239 (MQ=255) aCTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCa < 1:344206/235‑1 (MQ=255) aCTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCa < 2:293324/235‑1 (MQ=255) aCTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTc < 1:422978/239‑1 (MQ=255) cTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGGGG‑CGTTTTGCTTTTTATTCTGTCTTCACTCTGGATGTTTTATgga > 2:212084/1‑229 (MQ=255) cTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAt > 2:77604/1‑221 (MQ=255) cTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGAt < 1:77604/221‑1 (MQ=255) gTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCAcc > 1:813477/1‑239 (MQ=255) gTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTAtt < 2:605739/202‑1 (MQ=255) gTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTAtt > 1:605739/1‑202 (MQ=255) gTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATg > 2:892148/1‑227 (MQ=255) gTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATg < 1:892148/227‑1 (MQ=255) aaGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTTTTTCAACTCTGGATGTTTTATGAAGCAACTCACCATTCTTGGTTc > 2:373638/1‑239 (MQ=255) aaGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAg < 1:362490/219‑1 (MQ=255) aaGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAg > 2:362490/1‑219 (MQ=255) aTCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCg > 1:1148305/1‑239 (MQ=255) cAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGa > 1:782591/1‑234 (MQ=255) aGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGAtt < 1:530328/239‑1 (MQ=255) acgacgATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTTTCAACCCTGGATGTTTCATGAAGCAACTCACCATTCTCGGCTCGAACCGCTCGagt > 2:651360/1‑235 (MQ=255) acgacgATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGTTGTTTTATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCCAttt > 1:45896/1‑237 (MQ=255) acgacgATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGa > 2:239709/1‑235 (MQ=255) cgacgaTCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGt < 1:14661/239‑1 (MQ=255) gaacGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTgca < 1:373638/236‑1 (MQ=255) ctcAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGa < 2:699009/239‑1 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGttt > 1:351035/1‑140 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGttt < 2:351035/140‑1 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTc > 1:1080691/1‑152 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTc < 2:1080691/152‑1 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCCTGAAGCAACTCACCATTCTGGGCTCGACCGGCCCCATTGGTTGGCGCACGCTGGGCgtgtgtcg > 2:581926/1‑233 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCAc < 2:524429/187‑1 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCAc > 1:524429/1‑187 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGc < 1:610361/225‑1 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGGTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCCATTGGTTTCAGCACGCCGGGCgtggtggg > 2:743711/1‑236 (MQ=255) tGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGCCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGGAGAACGCTGGACttgggtcg > 1:625780/1‑234 (MQ=255) ctgactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCg > 1:572517/1‑239 (MQ=255) ctgactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTTTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTTTGGGCTCGACCGGCTCGGTTGGTTGCCGCACCCTGGACggggt > 2:610361/1‑225 (MQ=255) gactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGtc > 1:921999/1‑144 (MQ=255) gactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGtc < 2:921999/144‑1 (MQ=255) gactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCAc < 1:935133/175‑1 (MQ=255) gactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCAc > 2:935133/1‑175 (MQ=255) gactgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGaa < 1:239709/239‑1 (MQ=255) ctgaTGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATc < 2:949350/232‑1 (MQ=255) tgcAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCcg < 1:354362/238‑1 (MQ=255) aaGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGGGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCCCGACCGGCTCGATTGGTTGCAGGCAGCTGGACGGGGGGGGCCCGAATCCCGAAAACTTAcgccgaggt > 2:356592/1‑232 (MQ=255) aaTTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGGTGCATCACGCTTGACGTTGTGCGCCATAATCCCGAACACGTACGCGTAATTgc > 1:1024540/1‑235 (MQ=255) aaTTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTc < 2:604256/152‑1 (MQ=255) aaTTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTc > 1:604256/1‑152 (MQ=255) cAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCa < 1:231777/127‑1 (MQ=255) cAAAGAAGCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCa > 2:231777/1‑127 (MQ=255) agaagCAGAACTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTTGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCCGGCAAAAATGTccatcg > 1:382259/1‑233 (MQ=255) agcatgaCTGATGCAGTTCTGCGTGCGTGAACGACAAAGACGCGGGTCAGTAGATCCGTGGGGTGCTGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCACTTCTGGATGTGTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCGCGCTGGACGTGGTGGGCCATATTCCCGAACGCTTCCGCGTAGTTGCGGTGGTGGCAGGCAAAAATGTCACTCg < 2:266382/229‑1 (MQ=255) aCTGGTGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCg < 1:414659/229‑1 (MQ=255) aCTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCg < 2:572517/229‑1 (MQ=255) aCTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCg < 1:743049/229‑1 (MQ=255) aCTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCg < 2:1118852/229‑1 (MQ=255) aCTGATGCAGTTCTGATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCGCa < 2:1148305/231‑1 (MQ=255) aCTGATGAAGTACTGATAGCTTGGACGAGAAAAGCGCCGCTCAGTAGATCCGTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATGCTGTATCAGCTCTGAGTGTTTCATGAAGCATCTCAGCATTGTGGGCTCGACCGGCTCGATTGGTTGCAGCGCGCTGGGCGTGTTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCg < 2:530759/229‑1 (MQ=255) gATTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCGCATGGTAGAACAGTGCCTGGAAt > 1:893115/1‑238 (MQ=255) aTTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCa < 1:104694/105‑1 (MQ=255) aTTGCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCa > 2:104694/1‑105 (MQ=255) tCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCGCATGGTAGAACAGTGCCTGGAATtctct < 2:813477/239‑1 (MQ=255) | CGTCGTAAAGATCTGACCAAAATCGTTCGTGGTGAAGCAGAACAAGCGCGTGTTGCAGTACGTAACGTGCGTCGTGACGCGAACGACAAAGTGAAAGCACTGTTGAAAGATAAAGAGATCAGCGAAGACGACGATCGCCGTTCTCAGGACGATGTACAGAAACTGACTGATGCTGCAATCAAGAAAATTGAAGCGGCGCTGGCAGACAAAGAAGCAGAACTGATGCAGTTCTGATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGG‑CGTTTTGCTTTTTATTCTGTCTCAACTCTGGATGTTTCATGAAGCAACTCACCATTCTGGGCTCGACCGGCTCGATTGGTTGCAGCACGCTGGACGTGGTGCGCCATAATCCCGAACACTTCCGCGTAGTTGCGCTGGTGGCAGGCAAAAATGTCACTCGCATGGTAGAACAGTGCCTGGAATTCTCT > NC_000913/193196‑193670 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |