Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,192,441	A→C	V64G (GTC→GGC)	hflD ←	putative lysogenization regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,192,441	0	A	C	100.0%	149.8 / NA	46	V64G (GTC→GGC)	hflD	putative lysogenization regulator
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (32/14);  total (32/14)

ATCACATCAACATAGATAGCAGCCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑ACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAG  >  NC_000913/1192207‑1192670                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                      aTCACATCAACATAGATAGCAGCCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑Ccgcg                                                                                                                                                                                                                                   <  1:921008/239‑1 (MQ=255)              agatggCAGCCAGCGCGATCATCAGCGTTTCGGACTGTAAATCGAAGGGTGCGGGCTGGCGTTGCAGGCCGTTGAGCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTGGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCg                                                                                                                                                                                                                      <  2:898377/239‑1 (MQ=255)                   gcagcCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTAcc                                                                                                                                                                                                                 >  1:369811/1‑239 (MQ=255)                    cagcCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGTAGGTTGGCTTCGCTAcc                                                                                                                                                                                                                 >  1:582975/1‑238 (MQ=255)                    cagcCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGACCG‑CCGCGCAGGTTGGCGTCGCTAcc                                                                                                                                                                                                                 >  1:565709/1‑238 (MQ=255)                     agcCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCg                                                                                                                                                                                                                >  2:834564/1‑238 (MQ=255)                     agcCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCg                                                                                                                                                                                                                >  1:479322/1‑238 (MQ=255)                     acccATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGCGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCTCTACCg                                                                                                                                                                                                                >  1:1154285/3‑238 (MQ=255)                                           gcGGTCTGTAAATCGAAGTGTTCGGCCTGGCTTTGCAGGCCGTTGATCCGGTGGCCCGGAGTTC‑CGCGCGCGCTTTTGGTTGGGGAGAGTTGGCGCTCAAGCCCCACCAAGCTGAGTGTGTAGCGGTTTAATTCGGCTTTTAAGCCCTGGCGCCTGCTGGCATTGAGCACGCCGAGCAGGGTTCCCAGCCCG‑CCGCGCAGTTTGGTTTCGCTCCCGCCAAAAACCGCCAGCGTCGAGCt                                                                                                                                                                                         <  2:444617/238‑1 (MQ=255)                                                 tGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑Ccgcg                                                                                                                                                                                                                                   <  2:598632/191‑1 (MQ=255)                                                 tGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑Ccgcg                                                                                                                                                                                                                                   >  1:598632/1‑191 (MQ=255)                                                      aTCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGCGCGCGCCTTTCGCTGAGGAGCGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCCGCGTCGAGCTGGGGTTCata                                                                                                                                                                               >  1:401661/1‑238 (MQ=255)                                                             tgtTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCaataat                                                                                                                                                                       >  1:583414/1‑239 (MQ=255)                                                                       ggCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCaa                                                                                                                                                                           >  1:433438/1‑225 (MQ=255)                                                                               gggCTGTTTATCGGTTTGCACAG‑GTGTCCGAGGGCGCTTTTCGCTGAGGAAGGTTTGCCGTCAGGCCCGTTCAAGTTGGGGGGGTAGCGGGTTATTCGGGGGTTTAGGCCCTGGCGCTTGCGGGCTTGGAGCGCGCGGGGCAGGG‑TTCCAGGCCGCCCGGGCAGGTTGGTTCCGTTACGGCCAAAACCCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACgtg                                                                                                                                                     <  2:955892/238‑1 (MQ=255)                                                                                   cGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAgc                                                                                                                                                 >  1:939688/1‑239 (MQ=255)                                                                                               tGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATc                                                                                                                                      >  1:640131/1‑238 (MQ=255)                                                                                                 ccaagggtgt‑CGGGCGCGCTTTTCGCTGAGGGGATTTTCGGCACAAGCCCCTTCAAGCTGAGTTTGGAGCGGGTTATTTCGGCTTTAAACCCCTGGCGCCTGCTGGCATGGGCCCCGCGGAGCGGGGTTTCCAGCCCG‑CCGCGAAGGTTGGCTTCGCACCCGCAAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAataata                                                                                                                                                                      <  2:674221/198‑1 (MQ=255)                                                                                                      agTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGc                                                                                                                               >  1:971129/1‑238 (MQ=255)                                                                                                            cGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTtgagtg                                                                                                                                                            >  1:674221/1‑204 (MQ=255)                                                                                                              aGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTg                                                                                                                       >  1:990994/1‑239 (MQ=255)                                                                                                                   ccttttGGCTGAGGAGATTTGGCGCTAAAGCACCATCAAGCGGGGTGTGTGGGGGTTTAATCGGGCGTTTAAGCCTTGGCGCCTGCTGGCTTGGAGCCCGCCGAGAAGGTTTCCCAGCCCG‑CCGCGAGGTTTGGCTGCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCg                                                                                                                   <  2:939688/235‑1 (MQ=255)                                                                                                                     cTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAgt                                                                                                                >  1:38144/1‑239 (MQ=255)                                                                                                                                                      tCAAGCTGGGTGTGTAGGGGGTTAATTCGGCGTTTAGGCCCGGGCAACTGCGGGCATGGAGACCGCCGAGCAGGGTTCCCAGCCCG‑CCGCGCGGGTTGGTTCCGCTCCCGCAAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCa                                                                                                                                        <  2:967802/182‑1 (MQ=255)                                                                                                                                                          gCTGGGTGTGTGGGGGTTTATTTGGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCCCGCCGGGCAGGGTTCCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTCCCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTtga                                                                                                                                                               <  2:1142521/155‑1 (MQ=255)                                                                                                                                                            gtggtgtggCGCGGTTTATGTCGGCTTTTAAGCCCTGGCGACTGCGGGCAGTGGGCACGCCGAGCGGGGTTACCAGCCCG‑CCGCGCGGGTGGGCTTGCCTCCCGCAAAAATCCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGAATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGc                                                                             <  2:1154285/232‑1 (MQ=255)                                                                                                                                                              aGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCaa                                                                                                                                                                           >  1:444287/1‑139 (MQ=255)                                                                                                                                                              aGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGc                                                                       >  1:772558/1‑239 (MQ=255)                                                                                                                                                                tgtgtAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGcc                                                                                                                              >  1:967802/1‑182 (MQ=255)                                                                                                                                                                  tgtAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCa                                                                                                                                                                                 >  1:88875/1‑129 (MQ=255)                                                                                                                                                                    tAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACgtg                                                                                                                                                     >  1:1142521/1‑155 (MQ=255)                                                                                                                                                                    tAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGt                                                                 >  1:1037595/1‑239 (MQ=255)                                                                                                                                                                                   gCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTtga                                                                                                                                                               >  1:1052699/1‑130 (MQ=255)                                                                                                                                                                                   gCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTtga                                                                                                                                                               <  2:1052699/130‑1 (MQ=255)                                                                                                                                                                                   gCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAAt                                                   >  1:219878/1‑238 (MQ=255)                                                                                                                                                                                                      tgctgGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCt                               >  1:37588/1‑239 (MQ=255)                                                                                                                                                                                                         tgGCATTGAGCACGCCGAGCAGGGCTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCAACCGCCAATAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGCGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGc                                                                                               >  1:303810/1‑172 (MQ=255)                                                                                                                                                                                                           gCATTGAGCTCGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAataata                                                                                                                                                                      >  1:129109/1‑99 (MQ=255)                                                                                                                                                                                                            cATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATACTACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCCCTGCTTc                             >  1:372360/1‑235 (MQ=255)                                                                                                                                                                                                               tGAGCCCGCGGACGAGGTTCTCCAGCCCG‑CCGCGCGGGTTGGTTTCGCTACCGCAAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGttt                      <  2:37588/239‑1 (MQ=255)                                                                                                                                                                                                                     ccccGAACGGGGTTCCCGCCCCC‑CCGCGCGGGTTGCCTCCGCTCCCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTa                <  2:990994/237‑1 (MQ=255)                                                                                                                                                                                                                           gCAGGTTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAgcgc                                                                                                                                               <  2:1009079/106‑1 (MQ=255)                                                                                                                                                                                                                           gCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCaa                                                                                                                                                                           >  2:665018/1‑78 (MQ=255)                                                                                                                                                                                                                           gCAGGGTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAgcgc                                                                                                                                               >  1:1009079/1‑106 (MQ=255)                                                                                                                                                                                                                                gTTTCCAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGAtaataa      >  1:941507/1‑238 (MQ=255)                                                                                                                                                                                                                                    ccAGCCCG‑CCGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAg  >  1:927162/1‑238 (MQ=255)                                                                                                                                                                                                                                         ccg‑ccgCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAgcg                                                                                                                                                >  1:63604/1‑91 (MQ=255)                                                                                                                                                                                                                                         ccg‑ccgCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGc                                                                             >  2:156524/1‑158 (MQ=255)                                                                                                                                                                                                                                         ccg‑ccgCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGc                                                                             <  1:156524/158‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                      ATCACATCAACATAGATAGCAGCCATCGCGCTCATCAGCGTTTCGGACTGTAAATCGAAGTGTTCGAGCTGGCGTTGCAGGCCGTTGATCCGGTTGCCCAGAGTGT‑CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG‑ACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAG  >  NC_000913/1192207‑1192670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑