| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,921,059 | T→G | P279P (CCT→CCG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,921,059 | 0 | T | G | 98.2% | 177.9 / NA | 54 | P279P (CCT→CCG) | rsmF | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (30/23); total (30/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCTGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATG > NC_000913/1920830‑1921279 | tgCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGc < 2:409463/235‑1 (MQ=255) tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAATAGACTTACCCCGACGCAGTAGAGATTTTACCACTTGGCGATCTCTTCCCGGGTGcaaccaa > 1:200928/1‑231 (MQ=255) tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTTCCGGGTGcaaacaa > 1:76392/1‑231 (MQ=255) tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaacaa > 1:474642/1‑231 (MQ=255) cGATGCGCTAAAAAGCTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa < 1:700698/236‑1 (MQ=255) cGATGCGATAAAACACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACAGAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGGCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAgcg < 2:314297/232‑1 (MQ=255) gATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGAc < 2:474642/236‑1 (MQ=255) aTGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGAcc > 1:264976/1‑236 (MQ=255) gcgcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa > 2:191223/1‑232 (MQ=255) gcgcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa < 1:191223/232‑1 (MQ=255) gcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGCTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGTTGACCgaag > 1:156700/1‑236 (MQ=255) gaataCTGGTCACCAGAAATCAATCAGTGAATCGCATCTACACAACGGGATCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAgg < 2:155128/232‑1 (MQ=255) gTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTCCCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGACCTGACCGAAGAAGGCttt > 1:612985/1‑232 (MQ=255) cAGAAAGCAATCAGGAACTCGCAGATACCCAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGt < 2:15107/235‑1 (MQ=255) aGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGCAGAAGGATTCTTGCCGGGTTTccc > 2:751155/1‑236 (MQ=255) tCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTATGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTcccc > 2:700910/1‑231 (MQ=255) cAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c < 1:700910/232‑1 (MQ=255) ggAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCCAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAAttt > 2:642701/1‑236 (MQ=255) cGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGa < 2:594259/234‑1 (MQ=255) aGCTGCCCAACGTGAGCTTATCGACACAGCCTTTCATGCATTCCGGCCTGTTGGTACGCTGGTTTACTCGACCTGTACCCTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTGCCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCg < 2:200928/236‑1 (MQ=255) caACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGctt < 1:280702/236‑1 (MQ=255) cGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGcttctt > 1:17321/1‑236 (MQ=255) ggAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCttcttc > 1:308082/1‑235 (MQ=255) aaaaggacttttCATTCATGACGTCCTGGTGATACGCTGGTTTACTCGACCTGGACCTTAAACCAGGAAGAAAACGAATCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTGACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCGCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCt < 2:76392/227‑1 (MQ=255) aGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c < 1:678561/196‑1 (MQ=255) aGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c > 2:678561/1‑196 (MQ=255) gcgcCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGt > 2:614616/1‑236 (MQ=255) cgcCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGt > 1:646219/1‑235 (MQ=255) tttCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTa < 1:642701/232‑1 (MQ=255) ttACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGc > 2:155126/1‑233 (MQ=255) tACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaac < 1:307590/140‑1 (MQ=255) tACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaac > 2:307590/1‑140 (MQ=255) ccGTCCTGGTGGTACGCGGTTTGACTCGACCTGTACCTTAACCCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTCCCCCGACGCAGTAGAGTTTTTCCCACGTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑AGAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGAtt < 2:706740/234‑1 (MQ=255) tggtggTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTTAGGCGATTTCCGcc > 2:357837/1‑235 (MQ=255) aCGCTGTTTTACTGAACCTGTACCTTAAACCAGGAAGAAACAGAAGCCGTTT‑GCCTTGGGCTGAAAGAGACTTCCCCCGACGCAGTAGATTTTTTACCACTTGGCGATCTCTTCCCGGGTACAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGCCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCg < 2:308082/235‑1 (MQ=255) aCGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCg > 1:40823/1‑235 (MQ=255) cTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCACGCCTTACCCGcccc > 1:240472/1‑236 (MQ=255) gtgTTTACTCGA‑CTGTACCCTAAACCAAGAAAAAAACCGAGCCCTTTGGCCTGTGGCTAAAGGAGCCTTCCCCCGACACATTAGAGTTTTTACCACTTGGCTATCTCTTCCGGGGTGAAAACAAAGCGCTGACCGAAGAAGGCTTTTTTCATTTTTTCCCA‑AAAATTTACGCCTGCAAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGcccc < 2:637278/233‑1 (MQ=255) gTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGTCCCCa > 1:637278/1‑235 (MQ=255) tACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATa > 1:476577/1‑236 (MQ=255) actcaccttGTCCCTAAACCCGGGAAGAAACCGAGCCGGTTC‑GCCGGTGCCTGAAGTGGCTTTCCCCCGACGAAGTGGGGTTTTTCCCACTTGGCGATCTCTCCCGGGTTGCAAAAAAAGCGCTGACGAAAGAAGGCTTTTTGCATGTTTTCCCA‑AAATTTTCCGACTGCAAGGGTTTCTTCGTTGCTCGTCTGCGAAAACCTCAGGCGATTCCCGCCTTACCCGCCCCCAAATAc < 2:17321/228‑1 (MQ=255) ccTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTc > 1:590795/1‑236 (MQ=255) aaaCCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTATCCGCCCCCAAATCCAAAGTCGGTAATTTTc > 1:192894/1‑236 (MQ=255) aaacCGAAGCCTTTT‑GCCTGGGGCTAAAAGGGCCTAACCCCGCCGCAGTGAGGTTTTCACCATTTGGCGATCTCTTCCGGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCTTGTTTTCCCA‑AAAATTTCCGCCTGCGAGGGCTTCTTCGTTGCTCGTCGGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGcc < 2:192894/234‑1 (MQ=255) aGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAg > 1:393142/1‑236 (MQ=255) tgGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGCAAGATCGCGAAGCCgg > 1:390689/1‑236 (MQ=255) gtACCACGACGCAGTGGAGTTTTTACCACTTGGCTATCTCTTCCCGGGTGAAAACAAGCCGTTGACCGAAGAAGGTTTTTTGCATTTTTTCCCA‑CAAATTTCCGACTGCGAAGCCTTCTTCGTTGCTCGTCTGCGAAAAACTCAGGCGATCCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGt < 2:556924/231‑1 (MQ=255) tACCACGACTCATTAAATTTTATCCCACTTTCCTATCTCTTCCCTGCTCCAACCAAACCCATCACAAAACAATCCTTTTTGCAT‑TTTTCCCACCAAATTTACGACTCCCAATCTTTCTTCTTTCATCCTCTTCTTAAAACTCATCCATTTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTTAAAGATCGCGAAGCTGGACAAATTCGTCAggc < 2:156700/236‑1 (MQ=255) tAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGgtg > 2:734957/1‑234 (MQ=255) aCCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAAca > 1:707433/1‑235 (MQ=255) aCTTGGCTATCTCTCCCCGGTTGCAAACAAAGCCCTGACCGAAGAAGGCTTTTTCCTTTTTTCCCCA‑AAAATTACCGATGGCAAGGGTTTCTTCGTTCCTCGTTTGCTAAAACCTCGGGCGTTTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTggg < 2:393142/236‑1 (MQ=255) ttGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGAt > 2:727468/1‑236 (MQ=255) ggCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATg > 1:219180/1‑235 (MQ=255) tctcTTCCCGGGTCCAAAAAAGGCGCTGACCGAAGAAGGCTTTTTGCATGTTTCCCCA‑AAAATTTACGCCTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTAAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGt < 2:45254/144‑1 (MQ=255) | TGCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCTGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATG > NC_000913/1920830‑1921279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |