Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,927,578	A→C	I421R (ATA→AGA)	ptrB ←	protease II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,927,578	0	A	C	100.0%	236.0 / NA	67	I421R (ATA→AGA)	ptrB	protease II
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (30/37);  total (30/37)

TTGCCCCAGCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTATCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGATCATCAAAGGCAATACCAATGACTTCCC  >  NC_000913/1927370‑1927797                                                                                                                                                                                                                 |                                                                                                                                                                                                                            ttgCCCCAGCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGTACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATAcg                                                                                                                                                                                                  >  2:30986/1‑236 (MQ=255) ttgCCCCAGCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTc                                                                                                                                                                                                   >  1:580077/1‑235 (MQ=255)    ccccAGCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTcgccg                                                                                                                                                                                               >  1:352950/1‑236 (MQ=255)        atcacaccccCGGCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAACCTCAAGCGTCTACAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCAt                                                                                                                                                                                            <  2:426692/231‑1 (MQ=255)         gCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCCCGGGCGACTCTCCCCAGGTGTTCACTGCGTTAATTCGCCGCAtc                                                                                                                                                                                           >  2:237622/1‑234 (MQ=255)               caccGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCa                                                                                                                                                                                    >  2:36265/1‑236 (MQ=255)               caccGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATAACGGGCGACTCTCCACAGGTGTTCAATGCGGTCATTCGACGCCTTAAAACCa                                                                                                                                                                                    >  2:664931/1‑236 (MQ=255)                    ccgcGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGaa                                                                                                                                                                                >  1:301591/1‑235 (MQ=255)                    ccgcGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGaa                                                                                                                                                                                >  2:564595/1‑235 (MQ=255)                       cgAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTc                                                                                                                                                                            >  1:263751/1‑236 (MQ=255)                           cATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCgtt                                                                                                                                                                        <  1:520919/236‑1 (MQ=255)                           cATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCgtt                                                                                                                                                                        <  1:443774/236‑1 (MQ=255)                            aTGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCgttt                                                                                                                                                                       >  2:225381/1‑236 (MQ=255)                                    tGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAAt                                                                                                                                                               >  2:64516/1‑236 (MQ=255)                                    tGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCAAGAGCGACTCTCCACAGGGGTTCACTGCGGTAATTCTCCGCCTAAAAACCAGGAACTTCCGATTGTTTTac                                                                                                                                                                >  1:375976/1‑234 (MQ=255)                                     ggCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATa                                                                                                                                                              >  1:298015/1‑236 (MQ=255)                                       cGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATaca                                                                                                                                                            <  1:225381/236‑1 (MQ=255)                                          aGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATacac                                                                                                                                                           >  1:337746/1‑234 (MQ=255)                                              aaaGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCt                                                                                                                                                     <  2:263751/236‑1 (MQ=255)                                                aGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTcgc                                                                                                                                                                                                 >  1:12574/1‑190 (MQ=255)                                                aGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTcgc                                                                                                                                                                                                 <  2:12574/190‑1 (MQ=255)                                                aGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAAc                                                                                                                                                                               >  1:402086/1‑208 (MQ=255)                                                aGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAAc                                                                                                                                                                               <  2:402086/208‑1 (MQ=255)                                                      gaccgagcAAGCTCAGCCGACTAAACCTGACATCGGCATCAATACTTGCGCCGTAAGATCCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTTTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               <  2:406811/227‑1 (MQ=255)                                                      gATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCt                                                                                                                                                     <  1:208131/228‑1 (MQ=255)                                                      gATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               <  2:580077/234‑1 (MQ=255)                                                      gATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               <  2:352950/234‑1 (MQ=255)                                                      gATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               <  1:564595/234‑1 (MQ=255)                                                        tCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGtatc                                                                                                                                           >  2:556014/1‑236 (MQ=255)                                                               aaCTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGtatccatatcc                                                                                                                                    <  2:301591/236‑1 (MQ=255)                                                                 ctaacacGGCTAAACCTGAAATCGGCAGCAATACTTGCGCCGTAAGACCCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAAACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAg                                                                                                                                  <  2:136622/230‑1 (MQ=255)                                                                  tCAAGCGGCTAAAACTGAAATCAGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGt                                                                                                                                 >  2:338220/1‑236 (MQ=255)                                                                    aaGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTc                                                                                                                               >  2:476078/1‑236 (MQ=255)                                                                           tAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTcaaaca                                                                                                                          <  2:140041/234‑1 (MQ=255)                                                                           tAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTcaaaca                                                                                                                          <  1:36265/234‑1 (MQ=255)                                                                              aaCTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAgt                                                                                                                      <  1:270659/235‑1 (MQ=255)                                                                               gcggAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATGCACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAgtgt                                                                                                                    <  1:237622/233‑1 (MQ=255)                                                                                cTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTc                                                                                                                   <  1:42261/236‑1 (MQ=255)                                                                                cTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTc                                                                                                                   <  2:337746/236‑1 (MQ=255)                                                                                cTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTc                                                                                                                   <  1:206667/236‑1 (MQ=255)                                                                                cTGAAATCAGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTc                                                                                                                   <  1:338220/236‑1 (MQ=255)                                                                                   aaaTCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTgg                                                                                                                >  1:109199/1‑236 (MQ=255)                                                                                    aaTCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGgt                                                                                                               <  1:64516/236‑1 (MQ=255)                                                                                        ggCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGGGTCTGGTGTAg                                                                                                           >  1:699037/1‑236 (MQ=255)                                                                                                  cTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGGGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGgaaga                                                                                                 <  2:191394/236‑1 (MQ=255)                                                                                                      cgcCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               <  1:737013/186‑1 (MQ=255)                                                                                                      cgcCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCgg                                                                                                                                               >  2:737013/1‑186 (MQ=255)                                                                                                        ccGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGGTCAAACAAAGTGTCTGGTGTAGGCAAGGAAGAATAAcc                                                                                           >  2:207740/1‑236 (MQ=255)                                                                                                           tAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAAc                                                                                            <  1:626748/232‑1 (MQ=255)                                                                                                           tAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAAc                                                                                            >  2:626748/1‑232 (MQ=255)                                                                                                                  cATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAAt                                                                                 <  2:109199/236‑1 (MQ=255)                                                                                                                                 gCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTc                                                                      <  2:504284/232‑1 (MQ=255)                                                                                                                                 gCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTc                                                                      >  1:504284/1‑232 (MQ=255)                                                                                                                                    aCGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGAGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCt                                                               <  2:699037/236‑1 (MQ=255)                                                                                                                                            tgtCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGAt                                                           <  2:298015/232‑1 (MQ=255)                                                                                                                                              tCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAgg                                                     <  1:476078/236‑1 (MQ=255)                                                                                                                                                   tGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATc                                                >  2:410402/1‑236 (MQ=255)                                                                                                                                                                          aCCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGatcatc                         >  2:152140/1‑236 (MQ=255)                                                                                                                                                                           ccAACGAAACCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGAtcatca                        <  1:410402/236‑1 (MQ=255)                                                                                                                                                                                 aaaCCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCt                                                               <  2:275625/191‑1 (MQ=255)                                                                                                                                                                                 aaaCCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCt                                                               >  1:275625/1‑191 (MQ=255)                                                                                                                                                                                 aaaCCGGAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGATCATCAAAGGCa                  <  1:556014/236‑1 (MQ=255)                                                                                                                                                                                       gAACTTCGACGCCATCACGGGCGACTCTCCTCAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTa                                                                                                                                                                 <  2:417075/87‑1 (MQ=255)                                                                                                                                                                                       gAACTTCGACGCCATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTa                                                                                                                                                                 >  1:417075/1‑87 (MQ=255)                                                                                                                                                                                                 gCCATCACGGGCGACTCGCCACAGGTTTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGATCATCAAAGGCAATACCAATGACTTccc  <  1:307422/236‑1 (MQ=255)                                                                                                                                                                                                  ccATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGa                              <  1:97767/207‑1 (MQ=255)                                                                                                                                                                                                  ccATCACGGGCGACTCTCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGa                              >  2:97767/1‑207 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                            TTGCCCCAGCTCACCACCGCCGCGAACATGGACAATGGCGTAGACAAAGCCACGATCTAACAAACTCAAGCGGCTAAAACTGAAATCGGCATCAATACTTGCGCCGTAAGAACCATAGCCATACACCAGCAACGGGTTGTGTCCTTTGCGAAAATGTTTGCGATGGTAGACCAACGAAACCGGAACTTCGACGCCATCACGGGCGACTATCCACAGGTGTTCACTGCGGTAATTCGCCGCATAAAAACCAGGAACTTCCGTTTGTTTTAATACACGACGCTCACCGGTATCCATATCCAGTTCAAACAAAGTGTCTGGTGTAGTCATGGAAGAATAACCATAACGCAATCGCGCGGTTTCAGGTTCTGGATTGTAGGCAATCCAGGTCACATAGGCCGGATCATCAAAGGCAATACCAATGACTTCCC  >  NC_000913/1927370‑1927797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑