| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,769,648 | (C)6→7 | intergenic (+162/‑55) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,769,642 | 1 | . | C | 95.6% | 612.3 / 21.1 | 183 | intergenic (+156/‑61) | yfjQ/yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (5/3); new base C (89/86); total (94/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01 | |||||||||||
Only 100 of 212 total aligned reads displayed.
CTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑CC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGG > NC_000913/2769544‑2769736 | cTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑c < 1:5401794/100‑1 (MQ=255) tgtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc < 2:778635/100‑1 (MQ=255) gtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑c < 1:555061/100‑1 (MQ=255) gtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCATGTCCG‑cc‑ccc‑‑‑c > 1:136532/1‑100 (MQ=255) tgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cc < 1:4699746/100‑2 (MQ=255) tgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAAGAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cc > 1:1551618/1‑99 (MQ=255) gCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cct > 2:1638213/1‑98 (MQ=255) gCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cct > 1:2015230/1‑98 (MQ=255) ccTCAATCCCCCGGTTATAGCCTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTCCGTTGTCCATATCCTGTCCG‑cc‑ccc‑‑‑ccta > 1:684998/1‑97 (MQ=25) cTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cctct < 2:1807733/100‑5 (MQ=255) tCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cctctt < 1:3590431/100‑6 (MQ=255) tCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑cc‑ccc‑‑‑cctctt < 2:782290/100‑6 (MQ=255) tCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑CC‑CCC‑‑‑CTCttt < 2:4402322/100‑1 (MQ=255) cAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCttt < 1:4277976/100‑1 (MQ=255) cAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCttt < 2:1024902/100‑1 (MQ=255) aaTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTa < 2:273439/100‑1 (MQ=255) aaTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTa < 2:3258421/100‑1 (MQ=255) aTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTaa < 2:354356/100‑1 (MQ=255) aTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTaa < 1:1338669/100‑1 (MQ=255) tCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTaaa < 1:1500436/100‑1 (MQ=255) cccccGGTTTTAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAg < 2:4766408/100‑1 (MQ=255) ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGt < 2:1850819/100‑1 (MQ=255) ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGt < 2:3639695/100‑1 (MQ=255) cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTa > 1:2597833/1‑100 (MQ=255) ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTaa < 2:5094422/100‑1 (MQ=255) cGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAAt < 2:2153741/100‑1 (MQ=255) ggTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATc < 1:2779692/100‑1 (MQ=255) ggTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATc < 1:1861383/100‑1 (MQ=255) gTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATca > 2:4145499/1‑100 (MQ=255) taGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCAcatc > 2:5430801/1‑100 (MQ=255) aGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCAcatca > 2:3974652/1‑100 (MQ=255) aGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCAcatca > 1:970003/1‑100 (MQ=255) ttttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCAttt > 2:2385589/1‑100 (MQ=255) ttttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCAttt > 2:3883776/1‑100 (MQ=255) tttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCAtttt > 1:5026320/1‑100 (MQ=255) ttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtc < 2:3381786/100‑1 (MQ=255) ttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtc < 2:1315528/100‑1 (MQ=255) ttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtc < 2:4526389/100‑1 (MQ=255) ttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTCTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtc < 1:4980503/100‑1 (MQ=255) aaCCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtcag < 1:462775/100‑1 (MQ=255) cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtcagtc > 1:3200778/1‑100 (MQ=255) cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtcagtc > 1:4131306/1‑100 (MQ=255) cccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTtcagtcag > 1:3469479/1‑100 (MQ=255) gTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTa > 2:3527953/1‑100 (MQ=255) gTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTa < 2:718756/100‑1 (MQ=255) tACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc < 1:3818624/100‑1 (MQ=255) tACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc < 1:754451/100‑1 (MQ=255) tACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc < 2:3779433/100‑1 (MQ=255) naTCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCGGCCC‑CCC‑‑‑CTCTGTAAAGTAATGACATCATATTCAGTCAGTTAACtt > 1:4455262/2‑100 (MQ=14) cATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACtt > 1:4061265/1‑100 (MQ=255) cATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACtt < 1:2333960/100‑1 (MQ=255) tCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTc > 2:4625932/1‑100 (MQ=255) tCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTc > 1:5230952/1‑100 (MQ=255) cTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTcc < 2:3707292/100‑1 (MQ=255) cTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTcc > 1:1593945/1‑100 (MQ=255) cTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTcc < 1:5004787/100‑1 (MQ=255) cTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGga > 2:844475/1‑100 (MQ=255) ttttGCAGAAATAAAACATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGgag < 2:939989/100‑1 (MQ=17) ttttGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGgag < 1:2426256/100‑1 (MQ=255) ttttGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGgag < 2:4024921/100‑1 (MQ=255) ttGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGaa < 1:3917363/100‑1 (MQ=255) tGCACAAATAAAAAATAGTTTCTTCCTTCTACATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAATTAATCACATCATTTTCAGTCAGTTAACTTTCCTTGAGAAt < 1:4826817/100‑1 (MQ=17) gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtc > 1:402955/1‑100 (MQ=255) cAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtct < 2:4900141/100‑1 (MQ=255) aGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGCAtctc > 1:2234509/1‑100 (MQ=255) aaaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctctc < 1:1657954/100‑1 (MQ=255) aaaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctctc < 2:3318100/100‑1 (MQ=255) aaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCa < 1:2155940/100‑1 (MQ=255) aaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCa > 2:1960419/1‑100 (MQ=255) aTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTGCGCCC‑CCC‑‑‑CTCTTTAAAGAAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCAt > 1:5171059/1‑100 (MQ=21) aTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑CCACCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCAt > 2:4226150/1‑100 (MQ=255) aaaaaTAGTTTCTGCGTTATCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGac > 1:70271/1‑100 (MQ=255) aaaaTAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCGTTTGCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGaca < 2:5159506/100‑1 (MQ=18) aaTAGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGAcaca < 2:4093962/100‑1 (MQ=255) aGTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGc < 2:1442675/100‑1 (MQ=255) ntttCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCa > 1:271769/2‑100 (MQ=255) gTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCa > 1:2960399/1‑100 (MQ=255) gTTTCTGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCa < 1:4520581/100‑1 (MQ=255) ccacGTTGTCCATACCCGGTCCGCCC‑CCC‑‑‑CTCTTAAAATTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAc < 2:2523403/97‑1 (MQ=17) tGCGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcg < 1:3382082/100‑1 (MQ=255) tGCGTTGTCCATACCCTGTCCG‑CC‑CCCCCTCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGaa > 2:4854395/1‑100 (MQ=18) cGTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgcc > 2:3155110/1‑100 (MQ=255) gTTGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgccg > 2:851524/1‑100 (MQ=255) tGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACCCAGGCAGAACgccgcc > 2:2747963/1‑100 (MQ=255) tGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACgccgcc > 1:3705234/1‑100 (MQ=255) tGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACgccgcc < 1:2097062/100‑1 (MQ=255) tGTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACgccgcc < 2:3071686/100‑1 (MQ=255) gTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCa > 2:2988808/1‑100 (MQ=255) gTCCATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCa > 2:555973/1‑100 (MQ=255) tCCATACCCTGTCCG‑CC‑CCCA‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCAt > 1:4346874/1‑100 (MQ=255) ccttgcccTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTGAGTTTACTTTCCTGGAGAAGCTCTCATGACACAGGCAGAACGCGGCCATg > 2:5176639/6‑100 (MQ=17) ccATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATg > 2:2845233/1‑100 (MQ=255) cATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGa < 1:2310023/100‑1 (MQ=255) cATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGa > 1:1031872/1‑100 (MQ=255) cATACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGa > 2:4062060/1‑100 (MQ=255) aTACCCTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAc > 2:5033787/1‑100 (MQ=255) cccTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCgg > 2:2125575/1‑100 (MQ=255) cTGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggct < 1:3068128/100‑1 (MQ=255) tGTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctg < 2:2595116/100‑1 (MQ=255) gTCCGCCC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctgg > 1:3310036/1‑100 (MQ=255) | CTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCG‑CC‑CCC‑‑‑CTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGG > NC_000913/2769544‑2769736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |