BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,841,270	A→C	L157R (CTG→CGG)	nepI ←	putative transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,841,270	0	A	C	100.0%	646.2 / NA	181	L157R (CTG→CGG)	nepI	putative transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (95/86); total (95/86)

Only 100 of 185 total aligned reads displayed.

GAAAATACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCAGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGCCCAG  >  NC_000913/3841173‑3841365

gAAAATACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCGACCGATAAGCTCGTCTAAAAAACTGCCCAACGGCGCGGCAATCACCCgc                                                                                               >  2:5417763/1‑100 (MQ=255)

 aaaaTACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCcgcg                                                                                              <  1:760958/100‑1 (MQ=255)

 aaaaTACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCcgcg                                                                                              <  1:2246093/100‑1 (MQ=255)

    aTACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCaa                                                                                           <  1:234806/100‑1 (MQ=255)

    aTACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCaa                                                                                           <  2:417436/100‑1 (MQ=255)

     tACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAAt                                                                                          <  1:3226081/100‑1 (MQ=255)

      acacAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATa                                                                                         <  2:3929970/100‑1 (MQ=255)

       cacaGCACGCCCATCACCGCCGCCGCATTACAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAg                                                                                        >  2:1719122/1‑100 (MQ=255)

       cacaGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAACACTGCCCACCGGCGCGGCAATCACCCGCGCAATAg                                                                                        >  1:4076899/1‑100 (MQ=255)

       cacaGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAg                                                                                        >  2:1322500/1‑100 (MQ=255)

       cacaGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCGAAAAAGCTGCCCGACGGCGCGGCAATCACCCGCGCAATAg                                                                                        >  2:5258497/1‑100 (MQ=255)

          aGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGaaa                                                                                     <  2:2721985/100‑1 (MQ=255)

           gCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAAc                                                                                    >  1:2148058/1‑100 (MQ=255)

           gCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAAc                                                                                    >  1:3990977/1‑100 (MQ=255)

              cGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCGCCCGCGCAATAGAAACcgc                                                                                 >  2:4923421/1‑100 (MQ=255)

              cGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACcgc                                                                                 >  2:702537/1‑100 (MQ=255)

                cccATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCgcgc                                                                               <  1:3959793/100‑1 (MQ=255)

                  cATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCg                                                                             >  2:2130190/1‑100 (MQ=255)

                   aTCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGa                                                                            >  2:3642980/1‑100 (MQ=255)

                   aTCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGa                                                                            >  2:902079/1‑100 (MQ=255)

                   aTCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCAGa                                                                            >  1:5151418/1‑100 (MQ=255)

                      aCCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGa                                                                         <  1:2038428/100‑1 (MQ=255)

                      aCCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGa                                                                         <  1:1678240/100‑1 (MQ=255)

                        cgccgccgcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATc                                                                       <  1:4561638/100‑1 (MQ=255)

                           cgccgcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCAcc                                                                    <  2:405672/100‑1 (MQ=255)

                            gccgcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCg                                                                   >  2:3315985/1‑100 (MQ=255)

                            gccgcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCg                                                                   >  2:44630/1‑100 (MQ=255)

                            gccgcATTAAAGACATTGCGCCAACCGATAAGCACGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCg                                                                   <  1:3106841/100‑1 (MQ=255)

                             ccgcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGa                                                                  >  2:4343956/1‑100 (MQ=255)

                               gcATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACa                                                                <  1:2281172/100‑1 (MQ=255)

                                cATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAg                                                               <  2:3875865/100‑1 (MQ=255)

                                 aTTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgc                                                              <  2:839061/100‑1 (MQ=255)

                                 aTTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgc                                                              >  2:4248348/1‑100 (MQ=255)

                                  ttAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgcg                                                             >  1:30615/1‑100 (MQ=255)

                                  tgaaaGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgcg                                                             <  1:4720564/98‑1 (MQ=255)

                                   tAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgcgc                                                            >  2:1402295/1‑100 (MQ=255)

                                   tAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAgcgc                                                            >  2:766985/1‑100 (MQ=255)

                                    aaaGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCTCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGcc                                                           >  2:5004485/1‑100 (MQ=255)

                                    aaaGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGcc                                                           <  1:3567690/100‑1 (MQ=255)

                                     aaGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCt                                                          >  2:3199256/1‑100 (MQ=255)

                                      aGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCtt                                                         >  1:3416168/1‑100 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      <  2:5109437/100‑1 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      >  2:1087660/1‑100 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      >  1:5175414/1‑100 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      >  1:1796330/1‑100 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      <  2:3180516/100‑1 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCgg                                                      >  2:3665166/1‑100 (MQ=255)

                                         cATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACACGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTctg                                                      >  1:1380507/1‑98 (MQ=255)

                                          aTTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATCGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGc                                                     >  1:1993819/1‑100 (MQ=255)

                                          aTTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGc                                                     <  2:973981/100‑1 (MQ=255)

                                          aTTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGc                                                     <  1:2911010/100‑1 (MQ=255)

                                           ttGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCa                                                    >  2:4991155/1‑100 (MQ=255)

                                            tGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCAc                                                   <  2:347114/100‑1 (MQ=255)

                                            tGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCAc                                                   <  1:1934944/100‑1 (MQ=255)

                                              cgcCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCg                                                 <  1:4790451/100‑1 (MQ=255)

                                              cgcCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCg                                                 <  1:3365039/100‑1 (MQ=255)

                                              cgcCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCg                                                 >  1:2731682/1‑100 (MQ=255)

                                               nccAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGt                                                >  2:4588039/2‑100 (MQ=255)

                                               gcCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGt                                                >  2:5473969/1‑100 (MQ=255)

                                                      gATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACgcggc                                         <  2:267728/100‑1 (MQ=255)

                                                        tAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGcggcgg                                       <  1:632732/100‑1 (MQ=255)

                                                          aGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGTGCCTTCGGCACCGTACGCGGCGGCa                                     >  1:3742468/1‑100 (MQ=255)

                                                          aGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCa                                     <  2:1509792/100‑1 (MQ=255)

                                                          aGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCa                                     >  2:5377999/1‑100 (MQ=255)

                                                           gCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCAc                                    >  1:1154221/1‑100 (MQ=255)

                                                           gCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCAc                                    >  2:231596/1‑100 (MQ=255)

                                                           gCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCAc                                    >  1:150893/1‑100 (MQ=255)

                                                           gCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCAc                                    >  1:4701515/1‑100 (MQ=255)

                                                            cTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCAcc                                   <  1:3153610/100‑1 (MQ=255)

                                                                 cTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGTCACCAGACg                              >  2:4874770/1‑100 (MQ=255)

                                                                 cTAAAAAACTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACg                              >  1:4518645/1‑100 (MQ=255)

                                                                  tAAAAGACGGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGTCAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGc                             <  1:4480039/100‑1 (MQ=255)

                                                                    aaaaaCTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCAt                           <  1:2529763/100‑1 (MQ=255)

                                                                      aaaCTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATgg                         <  1:5547762/100‑1 (MQ=255)

                                                                      aaaCTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATgg                         <  2:1897070/100‑1 (MQ=255)

                                                                         cTGCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCa                      <  1:5356033/100‑1 (MQ=255)

                                                                           gCCCAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGc                    >  2:215204/1‑100 (MQ=255)

                                                                            cccAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCg                   >  1:1313671/1‑100 (MQ=255)

                                                                             ccAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGCTCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGa                  >  1:3658732/1‑100 (MQ=255)

                                                                              cAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGAc                 >  2:3983779/1‑100 (MQ=255)

                                                                              cAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGAc                 >  2:2530127/1‑100 (MQ=255)

                                                                              cAACGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGAc                 >  2:2084876/1‑100 (MQ=255)

                                                                               aaCGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACg                >  1:159028/1‑100 (MQ=255)

                                                                               aaCGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACg                >  1:1797231/1‑100 (MQ=255)

                                                                               aaCGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACg                <  1:4032531/100‑1 (MQ=255)

                                                                                 cGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGcc              <  1:3944823/100‑1 (MQ=255)

                                                                                 cGGCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCACGGTCAGCGACGcc              >  2:4314433/1‑100 (MQ=255)

                                                                                  ggCGCGGCAATCACCCGCGCAATAGAAACCGCGCCGCAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCg             <  1:5242469/100‑1 (MQ=255)

                                                                                    cgcgGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGAc           <  1:5343166/100‑1 (MQ=255)

                                                                                    cgcgGCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGAc           >  1:1422599/1‑100 (MQ=255)

                                                                                       ggCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATc        <  1:740374/100‑1 (MQ=255)

                                                                                       ggCAATCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATc        <  2:3950642/100‑1 (MQ=255)

                                                                                        gCAATCACCCGCGCAAAAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCg       >  2:5317623/1‑100 (MQ=255)

                                                                                          aaTCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGcc     <  1:3428249/100‑1 (MQ=255)

                                                                                          aaTCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGcc     >  2:3313922/1‑100 (MQ=255)

                                                                                           aTCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGCCGCCGACATCGccc    >  2:1565725/1‑100 (MQ=255)

                                                                                           aTCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGccc    >  1:3990399/1‑100 (MQ=255)

                                                                                           aTCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGccc    >  1:2633147/1‑100 (MQ=255)

                                                                                           aTCACCCGCGAAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACTGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGccc    >  2:5068748/1‑100 (MQ=255)

                                                                                            tCACCCGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGCCCa   <  1:1065638/100‑1 (MQ=255)

GAAAATACACAGCACGCCCATCACCGCCGCCGCATTAAAGACATTGCGCCAACCGATAAGCTCGCCTAAAAAACTGCCCAACGGCGCGGCAATCACCAGCGCAATAGAAACCGCGCCGAAGATCACCGACAGCGCCTTCGGCACCGTACGCGGCGGCACCAGACGCATGGTCAGCGACGCCGACATCGCCCAG  >  NC_000913/3841173‑3841365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`