BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	529,043	A→C	pseudogene (404/491 nt)	ybbD →	pseudogene

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	529,043	0	A	C	100.0%	842.6 / NA	236	pseudogene (404/491 nt)	ybbD	pseudogene
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (112/124); total (112/124)

Only 100 of 237 total aligned reads displayed.

CCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTAAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGCTTGAA  >  NC_000913/528946‑529139

 cAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAAc                                                                                                >  1:2104116/1‑100 (MQ=255)

 cAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAAc                                                                                                <  2:4190513/100‑1 (MQ=255)

  aGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAAcc                                                                                               >  1:2504531/1‑100 (MQ=255)

   gggAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑t                                                                                             >  1:2367151/1‑100 (MQ=255)

      aaCAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑tttt                                                                                          <  1:2978009/100‑1 (MQ=255)

      aaCAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑tttt                                                                                          <  1:2157571/100‑1 (MQ=255)

         aaGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑ttttttt                                                                                       <  1:5239478/100‑1 (MQ=255)

         aaGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑ttttttt                                                                                       <  2:3980508/100‑1 (MQ=255)

         aaGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑ttttttt                                                                                       <  1:4865964/100‑1 (MQ=255)

           gTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttg                                                                                     >  2:2433401/1‑100 (MQ=255)

           gTGGCGAAAATAGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttg                                                                                     >  2:1777060/1‑100 (MQ=255)

            tGGCGAAATACGTATGAAAGGATGATCCCGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgt                                                                                    <  2:2601783/100‑1 (MQ=255)

            tGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgt                                                                                    >  1:5574558/1‑100 (MQ=255)

             ggCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgtt                                                                                   >  2:4347726/1‑100 (MQ=255)

             ggCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgtt                                                                                   <  2:1281741/100‑1 (MQ=255)

             ggCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgtt                                                                                   <  1:1415154/100‑1 (MQ=255)

              gCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATCTGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTttgttg                                                                                  <  1:4982505/100‑1 (MQ=255)

                gAAAATCGTATCAAAGAATGATCCAGATAC‑AAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTg                                                                               <  1:4409292/100‑1 (MQ=255)

                  aaaTCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGa                                                                              >  2:4638/1‑100 (MQ=255)

                     tCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTAAAAt                                                                           <  2:4650641/100‑1 (MQ=255)

                      tctagcAAAGAATGATCGAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAAtt                                                                          <  1:5530960/95‑1 (MQ=255)

                       gTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTa                                                                         <  1:3361043/100‑1 (MQ=255)

                         aTCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAAt                                                                       <  1:3478638/100‑1 (MQ=255)

                          tCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATATCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATg                                                                      <  1:4893702/100‑1 (MQ=255)

                          tCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATg                                                                      <  2:3336033/100‑1 (MQ=255)

                          tCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATg                                                                      >  1:3018423/1‑100 (MQ=255)

                          tCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATg                                                                      <  1:4186279/100‑1 (MQ=255)

                          tCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATg                                                                      <  2:2969687/100‑1 (MQ=255)

                           cAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTTTTGTATTTAATGt                                                                     >  2:304717/1‑100 (MQ=255)

                           cAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTTGTGAAATTAATGt                                                                     >  2:827194/1‑100 (MQ=255)

                           cAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTATCAACC‑TTTTTTTTGTTGGTGAAATTAATGt                                                                     >  2:2909871/1‑100 (MQ=255)

                            aaaGAATGATCGAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGtt                                                                    >  2:5333072/1‑100 (MQ=255)

                            aaaGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGtt                                                                    >  1:4029783/1‑100 (MQ=255)

                              aGAATGATCCAGATACAAAGAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTTAAATTAATGTTAc                                                                  >  2:5036416/1‑100 (MQ=255)

                                  tGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCat                                                              >  1:4674346/1‑100 (MQ=255)

                                  tGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCat                                                              >  1:1660333/1‑100 (MQ=255)

                                     tCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCattat                                                           <  1:3575935/100‑1 (MQ=255)

                                       cAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTAttt                                                         >  2:85345/1‑100 (MQ=255)

                                        aGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTAtttt                                                        >  1:1366751/1‑100 (MQ=255)

                                         gATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTta                                                       <  1:2457838/100‑1 (MQ=255)

                                          aTACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTtat                                                      <  1:4571632/100‑1 (MQ=255)

                                           tACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTtata                                                     >  1:1258564/1‑100 (MQ=255)

                                           tACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTtata                                                     >  2:4116379/1‑100 (MQ=255)

                                           tACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTtata                                                     >  1:601236/1‑100 (MQ=255)

                                           tACAAAAAAAGTGTGGTGCAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTtata                                                     <  1:3154180/100‑1 (MQ=255)

                                             cAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAAc                                                   >  2:1538844/1‑100 (MQ=255)

                                               aaaaaaGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACaa                                                 >  1:190056/1‑100 (MQ=255)

                                                 aaaaGTGGGGTGTAAATATGGTAAGATACCAGGACAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAat                                               <  2:2054056/100‑1 (MQ=255)

                                                  aaaGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAata                                              >  1:1116464/1‑100 (MQ=255)

                                                  aaaGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAata                                              <  2:4829164/100‑1 (MQ=255)

                                                    aGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATAtt                                            <  2:5253923/100‑1 (MQ=255)

                                                      tgtgGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTgg                                          <  2:2783617/100‑1 (MQ=255)

                                                      tgtgGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTgg                                          <  2:4934568/100‑1 (MQ=255)

                                                       gtggtgTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGa                                         >  2:1999459/1‑100 (MQ=255)

                                                       gtggtgTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGa                                         <  2:1350670/100‑1 (MQ=255)

                                                         ggtgTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGc                                       >  2:4880469/1‑100 (MQ=255)

                                                          gtgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCt                                      <  2:3935448/100‑1 (MQ=255)

                                                          gtgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAAGTAATGTTACGCATTAGTTTATAACAAATATTGGAGCt                                      >  1:5188049/1‑100 (MQ=255)

                                                           tgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTg                                     >  1:866464/1‑100 (MQ=255)

                                                           tgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTg                                     <  1:1633016/100‑1 (MQ=255)

                                                           tgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTg                                     <  2:5500322/100‑1 (MQ=255)

                                                           tgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTg                                     >  2:692266/1‑100 (MQ=255)

                                                           tgtAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTg                                     <  1:1334745/100‑1 (MQ=255)

                                                             tAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGa                                   <  1:3971217/100‑1 (MQ=255)

                                                              aaaTATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGAt                                  >  1:700859/1‑100 (MQ=255)

                                                              aaaTATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGAt                                  <  2:2674262/100‑1 (MQ=255)

                                                               aaTATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGAtt                                 <  1:4153890/100‑1 (MQ=255)

                                                               aaTATGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTT‑TTTTTTTATTTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTg                                >  2:2582584/1‑100 (MQ=255)

                                                                  atGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGcc                              <  2:1100205/100‑1 (MQ=255)

                                                                  atGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGcc                              >  2:4326388/1‑100 (MQ=255)

                                                                   tGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCt                             >  1:1585383/1‑100 (MQ=255)

                                                                   tGGTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCt                             <  1:1945298/100‑1 (MQ=255)

                                                                     gTAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTAATAACAAATATTGGAGCTGGATTGCCTGa                           >  1:5089495/1‑100 (MQ=255)

                                                                      tAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTTTTTAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGAt                          >  2:4087720/1‑100 (MQ=255)

                                                                      tAAGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGAt                          <  2:1559438/100‑1 (MQ=255)

                                                                        aGATACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGc                        >  2:637933/1‑100 (MQ=255)

                                                                           tACCAGGGCAAGGGGATTGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtg                     <  1:3589798/100‑1 (MQ=255)

                                                                           tACCAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtg                     <  2:3677586/100‑1 (MQ=255)

                                                                             ccAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtgtg                   <  2:5250987/100‑1 (MQ=255)

                                                                             ccAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtgtg                   >  1:18476/1‑100 (MQ=255)

                                                                             ccAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtgtg                   <  2:1900702/100‑1 (MQ=255)

                                                                             ccAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTtgtg                   >  1:2888552/1‑100 (MQ=255)

                                                                              cAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGc                  <  1:264706/100‑1 (MQ=255)

                                                                              cAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGc                  <  2:420662/100‑1 (MQ=255)

                                                                              cAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGc                  <  1:4238904/100‑1 (MQ=255)

                                                                              cAGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTCGTGc                  <  2:5095945/100‑1 (MQ=255)

                                                                               aGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCa                 >  2:3555902/1‑100 (MQ=255)

                                                                               aGGGCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCa                 <  1:4374657/100‑1 (MQ=255)

                                                                                gggCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCag                >  1:1445539/1‑100 (MQ=255)

                                                                                gggCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCag                >  1:3638384/1‑100 (MQ=255)

                                                                                gggCAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCag                <  1:65240/100‑1 (MQ=255)

                                                                                   cAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGt             <  1:4536448/100‑1 (MQ=255)

                                                                                   cAAGGGGATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGt             >  2:4671214/1‑100 (MQ=255)

                                                                                       gggATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAAtt         >  2:23339/1‑100 (MQ=255)

                                                                                         gATGGTGTCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGc       <  1:5024953/100‑1 (MQ=255)

                                                                                          aTGGTGTCAACC‑TTTTTTTTTTTTTTTTTTTTAATGTTACGCATTATTTTATAACAAATATTGGTTCTGGATTTCCTGATGCTTGTGCAGAGCAATTGCt      >  1:536215/1‑100 (MQ=255)

                                                                                          aTGGTGTCAACC‑TCTTTTTTGTTGGTGCCATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCGGAGTAATTGCt      >  1:4903687/1‑100 (MQ=255)

                                                                                           tGGTGTCAACCTTTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGCt      <  1:2266114/100‑1 (MQ=255)

                                                                                             gtgtCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGCTTGa   <  1:846361/100‑1 (MQ=255)

                                                                                              tgtCAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGCTTGaa  >  2:3250606/1‑100 (MQ=255)

CCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATACCAGGGCAAGGGGATGGTGTAAACC‑TTTTTTTTGTTGGTGAAATTAATGTTACGCATTATTTTATAACAAATATTGGAGCTGGATTGCCTGATGCTTGTGCAGAGTAATTGCTTGAA  >  NC_000913/528946‑529139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`