Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913681,6990TA20.0% 368.0 / 91.9 172intergenic (+36/+24)djlC/hscCJ domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
Reads supporting (aligned to +/- strand):  ref base T (68/68);  new base A (18/16);  total (88/84)
Fisher's exact test for biased strand distribution p-value = 8.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 178 total aligned reads displayed.

ATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACT  >  NC_000913/681601‑681796
                                                                                                  |                                                                                                 
aTCAGTTTATCGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGttt                                                                                                  <  2:3457773/100‑1 (MQ=255)
aTCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGttt                                                                                                  >  2:518014/1‑100 (MQ=255)
   aGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcg                                                                                               >  2:2534164/1‑100 (MQ=255)
    gTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcgc                                                                                              >  1:1107801/1‑100 (MQ=255)
    gTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcgc                                                                                              <  1:1245179/100‑1 (MQ=255)
     tttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGCTGCCGGATGCCGCGTTTAcgcc                                                                                             >  1:2078848/1‑100 (MQ=255)
      ttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTTTTTTTTTCCGGATGCAGCGCTTAcgccg                                                                                            >  2:3760025/1‑100 (MQ=255)
         aCGGTGCTGGTGATAGCTTATGCTCTCGGCAAAATCGCGATGTTCTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCAt                                                                                         <  1:2183368/100‑1 (MQ=255)
            gTGCTGGTGATAGGTTATTCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCg                                                                                      <  2:2881134/100‑1 (MQ=38)
            gTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCg                                                                                      <  2:1571790/100‑1 (MQ=38)
            gTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCg                                                                                      <  1:41895/100‑1 (MQ=255)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                     <  1:167979/100‑1 (MQ=38)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                     <  2:2669217/100‑1 (MQ=38)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                     <  1:2963192/100‑1 (MQ=38)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                     <  2:327003/100‑1 (MQ=38)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                     <  1:1310239/100‑1 (MQ=38)
             tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCgg                                                                                     <  2:925865/100‑1 (MQ=255)
              gCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGc                                                                                    <  1:2936610/100‑1 (MQ=38)
               cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGCa                                                                                   <  2:1447025/100‑1 (MQ=38)
               cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGCa                                                                                   <  1:233579/100‑1 (MQ=38)
               cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCa                                                                                   >  1:2240126/1‑100 (MQ=255)
                tGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTTCGCCGCATCCGGCAg                                                                                  <  2:3037806/100‑1 (MQ=255)
                tGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAg                                                                                  >  1:882297/1‑100 (MQ=255)
                 ggTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGc                                                                                 >  2:236484/1‑100 (MQ=255)
                    gATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCgt                                                                              >  1:386025/1‑100 (MQ=255)
                        ggTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTTTTTTTTTTTTGATGCAGCGTTTACGCCGCATCTGGCATCCGTGttt                                                                          >  2:3090636/1‑100 (MQ=255)
                        ggTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGGCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGttt                                                                          >  2:3845217/1‑100 (MQ=255)
                        ggTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGttt                                                                          >  1:1615329/1‑100 (MQ=255)
                           tATGCTCTCGACAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATg                                                                       <  1:2417400/100‑1 (MQ=255)
                           tATGCGCGCGGCAAAGGCGCGATGTGGTTCAGCTGACGATGTGTTTTGTGGGCCGATGGCGGATGGAGCGTTTACGCCGCTTCCGGCAGCCGTGTTTagg                                                                       <  2:1872772/100‑3 (MQ=255)
                            aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                      >  2:2130499/1‑100 (MQ=255)
                            aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                      <  2:3317061/100‑1 (MQ=255)
                            aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                      <  1:665605/100‑1 (MQ=255)
                            aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                      <  1:2557745/100‑1 (MQ=255)
                             tGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATggg                                                                     <  2:2067869/100‑1 (MQ=255)
                             tGCTCTCGGCAAAATCGCGATGTTGTTCAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATggg                                                                     <  1:495455/100‑1 (MQ=255)
                              gCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGa                                                                    >  2:2483608/1‑100 (MQ=255)
                              gCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGa                                                                    <  2:1707007/100‑1 (MQ=255)
                               ctctCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAt                                                                   <  2:153703/100‑1 (MQ=255)
                               ctctCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAt                                                                   >  1:3540456/1‑100 (MQ=255)
                                  tcGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAtctc                                                                <  1:336161/100‑1 (MQ=255)
                                   cGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCa                                                               >  2:1986106/1‑100 (MQ=255)
                                     gCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAAt                                                             <  1:905375/100‑1 (MQ=255)
                                      cAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGCTGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATg                                                            <  1:508515/100‑1 (MQ=255)
                                       aaaaTCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATgg                                                           >  2:422068/1‑100 (MQ=255)
                                             gcgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaat                                                     >  1:2864007/1‑100 (MQ=255)
                                             gcgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaat                                                     >  2:721470/1‑100 (MQ=255)
                                              cgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGCTGCAGCGTTTACGCCGCATCCGGCAGCCGTGCTTCTGGGATCTCAATGGCTAaatc                                                    >  2:2465390/1‑99 (MQ=39)
                                              cgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaata                                                    >  1:1799049/1‑100 (MQ=255)
                                              cgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaata                                                    >  1:2010745/1‑100 (MQ=255)
                                                aTGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaataat                                                  <  2:3463903/100‑1 (MQ=255)
                                                aTGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaataat                                                  <  1:2765601/100‑1 (MQ=255)
                                                 tgttgtTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtc                                                 <  1:1653449/100‑1 (MQ=255)
                                                  gttgttTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcg                                                <  2:3194185/100‑1 (MQ=255)
                                                   ttgttTAGCTCACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcgc                                               <  1:2687647/100‑1 (MQ=255)
                                                         aGCTGACGATGTGTTTTTTTTTTTTTTTTCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgccc                                         >  2:535006/1‑100 (MQ=37)
                                                         aGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCACTGGCTAAATAATCGCTcgccc                                         >  2:786938/1‑100 (MQ=255)
                                                             gACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCccgccg                                     <  2:222493/100‑1 (MQ=255)
                                                              aCGCTGTGTCTTTTGCGCCGATGCCGGACGCAGAGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCccgccgc                                    <  1:1206720/100‑1 (MQ=255)
                                                              aCGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCccgccgc                                    >  1:3183743/1‑100 (MQ=255)
                                                               cGATGTGTTTTTTGCGCCGATGCCGGATGCAGAGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTGGATGGCGATTTAGGCGCTCGCtcgccgcc                                   >  1:189317/1‑100 (MQ=255)
                                                                 aTGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGACTAAATAATCGCTCGCCCGCCGCCGa                                 >  1:3585810/1‑100 (MQ=255)
                                                                   gtgtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAAc                               <  1:744905/100‑1 (MQ=255)
                                                                       tttttGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCa                           >  2:2985117/1‑100 (MQ=255)
                                                                       ttttgGCGGCGATGCCGGATGCTGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCa                           <  2:2475921/100‑1 (MQ=255)
                                                                        ttttGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCAt                          <  1:1031536/100‑1 (MQ=255)
                                                                               ccGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGCCCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCAcgcg                   >  2:3931062/1‑100 (MQ=255)
                                                                               ccGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCAcgcg                   >  2:1665295/1‑100 (MQ=255)
                                                                               ccGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCAcgcg                   >  1:3753679/1‑100 (MQ=255)
                                                                                cGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCgg                  >  2:1137026/1‑100 (MQ=255)
                                                                                  aTGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGc                <  1:106132/100‑1 (MQ=255)
                                                                                  aTGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGc                <  1:2288284/100‑1 (MQ=255)
                                                                                   tGCCGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGcc               >  1:3948709/1‑100 (MQ=38)
                                                                                    gCCGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCa              >  2:2219042/1‑100 (MQ=38)
                                                                                    gCCGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCa              >  2:1296978/1‑100 (MQ=38)
                                                                                    gCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCa              <  2:3188503/100‑1 (MQ=255)
                                                                                      cGGATGCGGCGTAAACGCTGCATCCGGCATCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata            >  1:3033270/1‑100 (MQ=37)
                                                                                      cGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata            >  1:2040680/1‑100 (MQ=38)
                                                                                      cGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata            >  1:3721517/1‑100 (MQ=38)
                                                                                      cGGATGCGGCGTAAACGCTGCATACGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata            >  2:2815772/1‑100 (MQ=38)
                                                                                      cGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata            <  2:1861134/100‑1 (MQ=255)
                                                                                       ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAGCTTCATCCACGCGGGCCatat           >  2:335496/1‑100 (MQ=38)
                                                                                       ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat           >  1:1526843/1‑100 (MQ=38)
                                                                                       ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat           >  1:308570/1‑100 (MQ=38)
                                                                                       ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat           >  2:1042958/1‑100 (MQ=38)
                                                                                       ggATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGCTCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTGCATCCCCGCGGGCCatat           <  2:123959/100‑1 (MQ=255)
                                                                                       ggATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat           >  1:3730392/1‑100 (MQ=255)
                                                                                       ggATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat           >  2:2980635/1‑100 (MQ=255)
                                                                                        gATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATc          >  1:2659709/1‑100 (MQ=39)
                                                                                        gATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATc          >  2:1359596/1‑100 (MQ=255)
                                                                                         aTGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCg         <  2:3632666/100‑1 (MQ=255)
                                                                                           gCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGtt       >  2:3869406/1‑100 (MQ=255)
                                                                                            catcGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGttt      <  1:3350296/97‑1 (MQ=255)
                                                                                            cAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGttt      >  2:1805052/1‑100 (MQ=255)
                                                                                            cAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGttt      >  2:3944859/1‑100 (MQ=255)
                                                                                             aGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCTATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTg     >  2:285894/1‑100 (MQ=255)
                                                                                              gCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGa    <  2:2766209/100‑1 (MQ=255)
                                                                                               gcgttACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGAc   <  2:2956570/97‑1 (MQ=255)
                                                                                               cGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGAc   >  1:2139631/1‑100 (MQ=255)
                                                                                                gTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACt  >  2:11711/1‑100 (MQ=255)
                                                                                                  |                                                                                                 
ATCAGTTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACT  >  NC_000913/681601‑681796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑