Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913681,7050CT20.7% 341.8 / 75.9 165intergenic (+42/+18)djlC/hscCJ domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
Reads supporting (aligned to +/- strand):  ref base C (65/65);  new base T (18/16);  total (83/82)
Fisher's exact test for biased strand distribution p-value = 8.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 181 total aligned reads displayed.

TTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCC  >  NC_000913/681606‑681804
                                                                                                   |                                                                                                   
tttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGCTGCCGGATGCCGCGTTTAcgcc                                                                                                     >  1:2078848/1‑100 (MQ=255)
 ttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTTTTTTTTTCCGGATGCAGCGCTTAcgccg                                                                                                    >  2:3760025/1‑100 (MQ=255)
 ttAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTAcgccg                                                                                                    <  2:283018/100‑1 (MQ=255)
    aCGGTGCTGGTGATAGCTTATGCTCTCGGCAAAATCGCGATGTTCTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCAt                                                                                                 <  1:2183368/100‑1 (MQ=255)
      ggTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATcc                                                                                               >  1:1987313/1‑100 (MQ=255)
       gTGCTGGTGATAGGTTATGCTCTCGGCAAAATTGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGTATGCGGCGTAAACGCTGCATCCg                                                                                              <  2:3999745/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  2:1965278/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  2:2669217/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  1:2963192/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  2:327003/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  1:1200310/100‑1 (MQ=38)
        tGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCgg                                                                                             <  2:925865/100‑1 (MQ=255)
        ggCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCgg                                                                                             <  1:554644/99‑1 (MQ=38)
          cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGCa                                                                                           <  2:1447025/100‑1 (MQ=38)
          cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGCa                                                                                           <  1:3093762/100‑1 (MQ=38)
          cTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCGGCGTAAACGCTGCATCCGGCa                                                                                           <  1:233579/100‑1 (MQ=38)
            ggTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGc                                                                                         >  2:2355615/1‑100 (MQ=255)
               gATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCgt                                                                                      >  1:386025/1‑100 (MQ=255)
                aTAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAgatcgg                                                                                     >  2:1676103/1‑95 (MQ=255)
                aTAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCgtg                                                                                     >  1:3775770/1‑100 (MQ=255)
                aTAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCgtg                                                                                     <  1:3213192/100‑1 (MQ=255)
                  aGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGtt                                                                                   <  2:2727488/100‑1 (MQ=255)
                  aGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCAGCAGCCGTGtt                                                                                   <  1:4042772/100‑1 (MQ=255)
                  aGGGTATGCTCGCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGGTTTTTGCGCGGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGtt                                                                                   <  2:3273361/100‑1 (MQ=39)
                   ggTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGGCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGttt                                                                                  >  2:3845217/1‑100 (MQ=255)
                    gTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGTAGCGTTTACGCCGCATCCGGCAGCCGTGTTTa                                                                                 >  2:1825040/1‑100 (MQ=255)
                      tATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATg                                                                               <  1:308031/100‑1 (MQ=255)
                      tATGCTCTCGACAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATg                                                                               <  1:2417400/100‑1 (MQ=255)
                       aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTTCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                              >  2:2130499/1‑100 (MQ=255)
                       aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                              <  1:2557745/100‑1 (MQ=255)
                       aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                              <  2:3317061/100‑1 (MQ=255)
                       aTGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATgg                                                                              <  2:2961055/100‑1 (MQ=255)
                        tGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATggg                                                                             <  2:2067869/100‑1 (MQ=255)
                        tGCTCTCGGCAAAATCGCGATGTTGTTCAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATggg                                                                             <  1:495455/100‑1 (MQ=255)
                          ctctCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAt                                                                           <  2:153703/100‑1 (MQ=255)
                           tctcGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAtc                                                                          <  1:1211494/100‑1 (MQ=255)
                             tcGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGAtctc                                                                        <  1:336161/100‑1 (MQ=255)
                                gCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAAt                                                                     <  1:905375/100‑1 (MQ=255)
                                gCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAAt                                                                     <  2:3006300/100‑1 (MQ=255)
                                 cAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGCTGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATg                                                                    <  1:508515/100‑1 (MQ=255)
                                  aaaaTCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATgg                                                                   >  2:422068/1‑100 (MQ=255)
                                        gcgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaat                                                             >  2:721470/1‑100 (MQ=255)
                                         cgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGCTGCAGCGTTTACGCCGCATCCGGCAGCCGTGCTTCTGGGATCTCAATGGCTAaatc                                                            >  2:2465390/1‑99 (MQ=39)
                                         cgATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaata                                                            >  1:1799049/1‑100 (MQ=255)
                                           aTGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAaataat                                                          <  2:3463903/100‑1 (MQ=255)
                                            tgttgtTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtc                                                         <  1:834635/100‑1 (MQ=255)
                                             gttgttTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcg                                                        <  2:3194185/100‑1 (MQ=255)
                                               tgttTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcgct                                                      >  1:3567985/1‑100 (MQ=255)
                                                gttTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAAtcgctc                                                     >  1:28136/1‑100 (MQ=255)
                                                    aGCTGACGATGTGTTTTTTTTTTTTTTTTCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgccc                                                 >  2:535006/1‑100 (MQ=37)
                                                    aGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCACTGGCTAAATAATCGCTcgccc                                                 >  2:786938/1‑100 (MQ=255)
                                                     gCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTcgcccg                                                >  1:1659813/1‑100 (MQ=255)
                                                       tGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCCCAATGGCTAAATAATCGCTagcccgcc                                              >  1:1635277/1‑100 (MQ=255)
                                                          cGATGTGTTTTTTGCGCCGATGCCGGATGCAGAGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTGGATGGCGATTTAGGCGCTCGCtcgccgcc                                           >  1:189317/1‑100 (MQ=255)
                                                             tgtgTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGaa                                        >  1:2185050/1‑100 (MQ=255)
                                                             tgtgTTTGTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTG‑TTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAAc                                       <  2:3168464/100‑1 (MQ=255)
                                                              gtgtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAAc                                       >  2:3942075/1‑100 (MQ=255)
                                                              gtgtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAAc                                       <  1:2729237/100‑1 (MQ=255)
                                                                gtTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACtt                                     >  1:1583913/1‑100 (MQ=255)
                                                                  tttttGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCa                                   <  2:2514917/100‑1 (MQ=255)
                                                                  ttttgGCGGCGATGCCGGATGCTGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCa                                   <  2:2475921/100‑1 (MQ=255)
                                                                   ttttGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCAt                                  <  1:1031536/100‑1 (MQ=255)
                                                                     ttGCGCCGATGCCGGATGCAGCGTTTACGTCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATcc                                <  1:3729250/100‑1 (MQ=255)
                                                                         gcCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCAcgc                            <  1:2022524/100‑1 (MQ=255)
                                                                          ccGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCAcgcg                           >  1:3753679/1‑100 (MQ=255)
                                                                           cGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCgg                          <  2:2047775/100‑1 (MQ=255)
                                                                           cGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCgg                          >  2:1137026/1‑100 (MQ=255)
                                                                             aTGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGc                        <  1:106132/100‑1 (MQ=255)
                                                                               gCCGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCa                      >  2:1296978/1‑100 (MQ=38)
                                                                               gCCGGAGGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTAGGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACGTCATCCACGCGGGCCa                      <  2:3921733/100‑1 (MQ=255)
                                                                                ccGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCat                     >  2:3075946/1‑100 (MQ=255)
                                                                                 cGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata                    >  1:2892030/1‑100 (MQ=38)
                                                                                 cGGATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata                    >  1:293828/1‑100 (MQ=38)
                                                                                 cGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata                    <  2:1861134/100‑1 (MQ=255)
                                                                                 cGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCata                    >  1:714949/1‑100 (MQ=255)
                                                                                  ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCCATGGCTCAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCCGGCCacct                   >  2:2874097/1‑97 (MQ=37)
                                                                                  ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAGCTTCATCCACGCGGGCCatat                   >  2:335496/1‑100 (MQ=38)
                                                                                  ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat                   >  1:1526843/1‑100 (MQ=38)
                                                                                  ggATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat                   >  2:1042958/1‑100 (MQ=38)
                                                                                  ggATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCatat                   >  2:2980635/1‑100 (MQ=255)
                                                                                   gATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATc                  >  1:2659709/1‑100 (MQ=39)
                                                                                   gATGCGGCGTAAACGCTGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCGCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATc                  >  2:2421314/1‑100 (MQ=38)
                                                                                   gATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATc                  >  2:1359596/1‑100 (MQ=255)
                                                                                      gCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGtt               <  1:2250483/100‑1 (MQ=255)
                                                                                       cAGCGTTTACGCCTCATCCGGCAGCCGGATTTATGGGATCTCAATGGCTAAATAATCGCACGCCCGCCGCCGAACTTCATCCACGCCGACCATATCGttt              >  1:3595580/1‑100 (MQ=255)
                                                                                       cAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGttt              >  1:3373839/1‑100 (MQ=255)
                                                                                       cAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGttt              >  2:2219216/1‑100 (MQ=255)
                                                                                        aGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTg             <  2:1662273/100‑1 (MQ=255)
                                                                                         gCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGa            <  2:2766209/100‑1 (MQ=255)
                                                                                          gcgttACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGAc           <  2:2954889/97‑1 (MQ=255)
                                                                                          cGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGAc           >  1:2139631/1‑100 (MQ=255)
                                                                                           gTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACt          >  2:11711/1‑100 (MQ=255)
                                                                                           gTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGACATATCGTTTGACt          >  2:3655000/1‑100 (MQ=255)
                                                                                                cgccgcCTCCGGACGCCGTGTTTATAGGATCTAGCTGGCAAAATAAACCCTCGCCCGCTGTCTAAGTTCATCAACCGGGGCCATATCGTTTGACGTCAAc     >  2:1667099/1‑100 (MQ=255)
                                                                                                cgccgcATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAc     <  2:1012105/100‑1 (MQ=255)
                                                                                                cgccgcATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAc     >  1:3926429/1‑100 (MQ=255)
                                                                                                cgccgcATCCAGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGCGCCATATCGTTTAACTGCAAc     >  2:1359746/1‑100 (MQ=255)
                                                                                                  ccgcATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAcgc   >  1:2624449/1‑100 (MQ=255)
                                                                                                  ccgcATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAAcgc   >  1:1380498/1‑100 (MQ=255)
                                                                                                   cgcATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGTCCATATCGTTTGACTGCAAcgcc  >  2:1782697/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TTTAACGGTGCTGGTGATAGGTTATGCTCTCGGCAAAATCGCGATGTTGTTTAGCTGACGATGTGTTTTTTGCGCCGATGCCGGATGCAGCGTTTACGCCGCATCCGGCAGCCGTGTTTATGGGATCTCAATGGCTAAATAATCGCTCGCCCGCCGCCGAACTTCATCCACGCGGGCCATATCGTTTGACTGCAACGCC  >  NC_000913/681606‑681804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑