New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1060875 =	130 (0.960)	4 (0.030)	4/336	10.2	2.8%	coding (1620/2547 nt)	torA	trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
	?	NC_000913	1061210 =	149 (1.140)					coding (1955/2547 nt)	torA	trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTACTCTTTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1061116‑1060875 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattgAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCC  >  NC_000913/1061210‑1061445                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTACTCTTTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGA                                                                                                                                                                                                                                                 >  2:952691/1‑239  GTACTCTTTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCGCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGA                                                                                                                                                                                                                                                 <  2:1464420/238‑1         TTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACCCCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   <  2:193079/229‑1         TTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   >  1:193079/1‑229                                    GGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   >  1:1413502/1‑202                                    GGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTGGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   <  2:1413502/202‑1                                                                           TCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTG                                                                                                                                                                                                                                              >  2:849053/1‑168                                                                           TCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTG                                                                                                                                                                                                                                              <  1:849053/168‑1                                                                                                                                                  ACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   <  1:381732/92‑1                                                                                                                                                  ACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGT                                                                                                                                                                                                                                                   >  2:381732/1‑92                                                                                                                                                               CGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGG                                                                                                                                                      <  2:1109242/172‑1                                                                                                                                                               CGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGG                                                                                                                                                      >  1:1109242/1‑172                                                                                                                                                                                        CCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGC                                                                                  <  2:1789884/215‑1                                                                                                                                                                                        CCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGCGATTGAGATCTACTCGACAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGC                                                                                  >  1:1789884/1‑215                                                                                                                                                                                                                                             TGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAA                                                                                                                                     >  2:1285768/1‑111                                                                                                                                                                                                                                             TGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAA                                                                                                                                     <  1:1285768/111‑1                                                                                                                                                                                                                                                TTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCC  >  1:690337/1‑239                                                                                                                                                                                                                                                TTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGT                                                                                                                            >  1:617627/1‑117                                                                                                                                                                                                                                                TTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGT                                                                                                                            <  2:617627/117‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTACTCTTTGTTATTCCAGAAGTCATCAAACGCTGGCAGATGAACGCCGCGTCCTTTGCCTTGCTGTACACCTTCCTGCCAGATGCGTTTCAGCCAGCCCATTTCGTCCAGCCCTTCGGTAAAGGCTTCTTCGCGATTAAAGCGACGGCACAGCTCGCGGAAAATATCGAAGTCGTTGCGCGCCTCGAACTGCGGCGGCACCACCTGTTTCATGGCGATAATGCCACGGTTGGAGTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1061116‑1060875 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattgAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCC  >  NC_000913/1061210‑1061445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.