New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4095482	187 (1.380)	4 (0.030)	4/328	10.1	2.5%	coding (501/1260 nt)	rhaA	L‑rhamnose isomerase
	?	NC_000913	= 4095710	132 (1.030)					coding (273/1260 nt)	rhaA	L‑rhamnose isomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCGCTGATCACCTCATCCAGTGCTGCCAGCAGACGCTGACGCGGGGCGAGACGGTCAACGGTGATATCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4095341‑4095482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgaaacgGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTTTCGG  <  NC_000913/4095710‑4095475                                                                                                                                                                                                                                                                                                                                                                                            CTCGCTGATCACCTCATCCAGTGCTGCCAGCAGACGCTGACGCGGGGCGAGACGGTCAACGGTGATATCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAA                                                                                                                                             >  1:599339/1‑239                                                                    TCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGG                                                                                                                                                           >  1:662919/1‑158                                                                    TCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGG                                                                                                                                                           <  2:662919/158‑1                                                                                                                  CGAGTTGCTCGCCAAAATAGGCCGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATC                             <  2:599339/238‑1                                                                                                                                        CGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTT      >  1:286677/1‑239                                                                                                                                        CGAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTT      >  2:1513565/1‑239                                                                                                                                         GAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCA                                                  >  1:1471992/1‑194                                                                                                                                         GAAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCA                                                  <  2:1471992/194‑1                                                                                                                                          AAACGGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTTTC    >  2:449914/1‑239                                                                                                                                              GGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTTTCGG  >  1:1097491/1‑237                                                                                                                                                                                                                                                                                                                                                                                            CTCGCTGATCACCTCATCCAGTGCTGCCAGCAGACGCTGACGCGGGGCGAGACGGTCAACGGTGATATCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4095341‑4095482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgaaacgGCTTAATTTACATGCCATCTATCTGGAATCAGATACGCCAGTCTCGCGCGACCAGATCAAACCAGAGCACTTCAAAAACTGGGTTGAATGGGCGAAAGCCAATCAGCTCGGTCTGGATTTTAACCCCTCCTGCTTTTCGCATCCGCTAAGCGCCGATGGCTTTACGCTTTCCCATGCCGACGACAGCATTCGCCAGTTCTGGATTGATCACTGCAAAGCCAGCCGTCGCGTTTCGG  <  NC_000913/4095710‑4095475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.