| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,483,261 | 0 | C | A | 30.7% | 169.4 / 16.2 | 76 | A27S (GCG→TCG) | emrK | multidrug resistance efflux pump membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base C (42/10); new base A (0/23); total (43/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.78e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGT > NC_000913/2483029‑2483496 | atatTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCaataaa < 2:870948/239‑1 (MQ=255)atatTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCaataaa < 1:1694773/239‑1 (MQ=255) attattTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTAcc > 2:457352/1‑238 (MQ=255) tttttttGAGTGCTATAGTGGCTTATGTTTTTTCCAGTGAAACTAAAATGTCACCTTGTCGACCTTAGTTAGTTTTTTTATGATTAACGACGGTGACACTACCTGAGATTTGTGCAAAAATGGG‑ATCTGCATCCCCCGTAACATAGGCGTCATCTGTCCAAATCATGTTTTTAAATTCCATTACCCAAAAGGA‑AAAGGCACCTGAAACCGAAAAAAAAAAAACTACCGCCAATAAAGaa < 2:1482170/238‑1 (MQ=255) aTTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAga > 1:722565/1‑238 (MQ=255) tCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAg > 2:1662213/1‑235 (MQ=255) ttttATCCAGAGAAACAAAAATGCCCCCTTGTCGAACGTGGTTGTTATTTTTATGATTAACGGCAGTACCCCACCCTGAGCTTTGTGCA‑AAATTGGTATCTCCATCCCCCGTGACATAGGCGTCATCTGTACTAAACATGTTTTAAAATCCCATTGCCAAATAGGA‑AAAGGCCCCGAAAACCGCAAAAAAAAAAACTACCGCCAATa < 2:219347/207‑1 (MQ=255) ttttATCCAAGAAAACAAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAAAAATTGG‑ATCTGCATTCCCCGGGACATAGGCGTCATCTTTACAAATCATGTTTTCAAATTCCATTGACAAATAGGC‑ATAGGCACCTAAAAACGAAAAAAAAAAACCTACCGCCAATAAAGa < 2:537139/211‑1 (MQ=255) atacattaaaaCAAAAGTGACACCTGGTCAAACGTATTTCATTTCTTTATTATAAACAACGGTGACACTCCCTGAGTCTTGGTCAAAAGTTGG‑TTCTCCATTCCCCGTGAAATGGGCGTAATCTGTACAAATAATTTCTTAAAATTCCATAGCCAAAAAGGA‑ATAGGCCCTTAAAAACGAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt < 2:229523/231‑1 (MQ=255) tCCAGTGAAACTAAAATCACACCTTGGGGAACGTATTTCGTATCTTTCTGATTACCGACCGTGAATCTCCCGGGGACTTGTGCAGAAATTGA‑TTCTGCATTCCCCGGGACATAGGCTTCATCTTTACTAAACATTTCTTCAAATCCCATTGACCAAGGGGC‑AAAGGCACCTGAAACCGCAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAtt < 1:1696323/239‑1 (MQ=255) tGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTa > 1:219347/1‑207 (MQ=255) tGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTAtttt > 1:537139/1‑211 (MQ=255) aaaaataaaatTTCCCCTTGTCGAACGTATTTCGTATTTTTATGATTAACGACAGTGACCCTCCCTGAAATTTGTGCAGAAATTGG‑ATCTGCTTTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCAAATTCCATTGACAAATAGGC‑ATAGGCCCTTGAAACCGCAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGaa < 1:1339992/236‑1 (MQ=255) aaaCTAAAATGTCACCTTGTCAAACGTATTTCGTACCTTTATGATTAACGACAGTAACCATCCCTGAGATTTGCGCAAAAATGGA‑ATCTGCATTCCCCGTGAAATAGGCCTCATCTGTACTAATCATGTCTTCGAATACCATTAACAAATAGGC‑ATAGGCCCCTGAAAACGAAAAAAATAAAACAACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTa < 1:1111917/239‑1 (MQ=255) aaTGTCTCTTTGTCGAACGTAGTTGTTTTTTTTATGATTAACGACAGTGACACTACCTGAGATTTGTGCAGAATTTGG‑ATCTGCATTCCCCGTGAAAAAGGCTTAATTTGTACTAATCATTTCTTCTAATTCCATGGACCAATAGGA‑ATAGCAACCTAAAAACAAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGGATTAATCTGtt < 1:1758600/239‑1 (MQ=255) aTGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTaa > 1:263298/1‑232 (MQ=255) tGTCAAGCGTATTTCTAATTTTAAGGATAAACGCCAGTACCCCTACCTGAGACTTTTGCAAAAATTGG‑ATCTGCATTCCCCGGGAATTAGGCCTCATCTGTACAAATCTTGATTTCAATTCCCATTGCCAAAAAGGC‑ATAGGCACCTGAAAACGAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtattat < 2:1370236/239‑1 (MQ=255) ttCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACt > 1:965546/1‑222 (MQ=255) tATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCa < 2:1761242/140‑1 (MQ=255) tATCTTTATGACTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACAAAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCa > 1:1761242/1‑140 (MQ=255) tttATGATAAAGTACAGTAACACTACCTAAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTAACATAGGCGTCATCTGTACTAATCATGTCTTCAAATCCCATTGACCAATAGGC‑ATAGGCCCCTAAAAACGAAAAAAATAAAACTACCGCCAATAAAGaaaa < 1:282244/165‑1 (MQ=255) aCGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTttctt > 2:282244/1‑165 (MQ=255) aCGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaa > 2:1479621/1‑239 (MQ=255) acacTACCTGATATTTGTGCAGAATTTGG‑ATCTTCATCCCCCGTGCCAAAGGCGTAATCTGTTCTAAACTTGTCTTCTAATTCCATTGACAAATAGAA‑ATAGGCACCTGAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGaa < 2:1486316/165‑1 (MQ=255) gagaCTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcat > 2:268478/1‑238 (MQ=255) agaCTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt > 1:1486316/1‑165 (MQ=255) agaCTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattc > 1:1579485/1‑239 (MQ=255) aCTTGTGCAAAATTTGG‑TTCTGCATCCCCCGTGACATGGGCGTCTTCTGTACTAATCATGTCTTCTAATCCAATTGCCCAAAAGGA‑AAAGGCCCCTAAAACCGAAATAAAAAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattca < 2:315373/238‑1 (MQ=255) ttGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattcat > 2:1019366/1‑237 (MQ=255) gtgCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaat > 2:149076/1‑215 (MQ=255) gtgCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct > 2:647778/1‑238 (MQ=255) gtgCAAAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGAAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaat < 1:149076/215‑1 (MQ=255) gCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 1:647778/238‑1 (MQ=255) aaaTTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc > 1:168446/1‑239 (MQ=255) aaaTTGG‑ATCGTCATTCCCCGTGAAATAGGCGTCATTTGTACTAATCATGTCTTCTAATCCCATTGACCAAAAGGC‑AAAGACCCCTAAAAACGAAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc < 1:224974/239‑1 (MQ=255) aaaTTGC‑ATCTTCTTTCCCGGTAGAAAAGCGGTCTTTTGTAATAATCATTTCTTCAAATTCCATTGACCAATAGAA‑AAAAGCTGTTGAAAACAAAATAAATAAAAATTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATc < 2:1500768/239‑1 (MQ=255) tggttctaaaTTCCCCGGGAAATAGGCGTCATTTACACTAATCTTTTCTTATAATTCATTTGACAAAAAGGA‑ATAGGCACCGAAAAACGAAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAac < 1:1705496/230‑1 (MQ=255) tGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGt > 1:260609/1‑238 (MQ=255) acATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTAAAAACGAAATAAATAAAACTATCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGc < 2:640103/238‑1 (MQ=255) cATTCCCCGTGACATAGGCGTCATCTGTACTAATCTTGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAATGCAATAAATAAAACTACCGCCAATAAAGAAAAGAATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTTTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCa > 2:1314029/1‑239 (MQ=255) cATCCCCCGTGAAATGGGCTTAATCTTACCAAATCATGTTTTTTAATTCCATT‑ACCAAAAAGCAATAGGCCCATAAAAACGAAAAAAAAAAATTTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTc < 2:1767399/157‑1 (MQ=255) ttCCCCGCGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTg > 1:732670/1‑235 (MQ=255) ccaggaaCATAGGCGTTATTTAAACTAATATTCTTATGTAATCCCATTGACGAATAGGA‑ATAGGCACATAAAAAGCAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATgtgt < 2:263298/233‑1 (MQ=255) cgggACATAGGCGGCATTTTTACAAATCATGTCTTAAAATCCAATACACCAATAGGC‑ATAGCCCCCTAAAAACAAATAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTg < 2:812085/236‑1 (MQ=255) gACATAGGCGTTATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGGAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtc > 1:1767399/1‑157 (MQ=255) gACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGcac > 2:1374375/1‑239 (MQ=255) cATAGGCTTCATCTGTACTAAACATTTCTTCTAATTCCATTAACCAATAGGA‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtatt < 2:936111/152‑1 (MQ=255) aaTAGGCGTCATCTTTACTAATAATGTCTTAAAATTCCATTGACAAATAGAC‑ATAGGCCCCTAAAAACGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGaa < 2:492192/133‑1 (MQ=255) aGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCTTTTCTCATAGATGAAATTTa > 1:1791845/1‑177 (MQ=255) gCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGc < 1:706546/221‑1 (MQ=255) gCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGc > 2:706546/1‑221 (MQ=255) gCGTCATCTGTACTAAACATGTCTTCAAATTCCATCAACAAATGGGC‑AGAGGCCCCTGAAAACGCAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTttctt < 2:594801/105‑1 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGtt > 1:492192/1‑134 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCAtt > 1:936111/1‑152 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa > 1:788132/1‑239 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGa > 1:138530/1‑239 (MQ=255) tACTAATCATGTCTTTTAATACCATAAACCAAAGGGC‑AAAGGCACCTAAAATCGAAAAAAATAAACTTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt < 2:453612/114‑1 (MQ=255) tACTAATCATGTCTTCTAATTCCTTTGCCAAAAAGGC‑ATAGCCTCTTAAAAACAAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTttctt < 2:160267/95‑1 (MQ=255) tACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAAt > 1:594801/1‑105 (MQ=255) tACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCa > 1:164988/1‑152 (MQ=255) aTGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCt > 1:789931/1‑239 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 2:1307779/1‑239 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAAt > 1:160267/1‑95 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTa > 1:293482/1‑103 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAAt > 1:453612/1‑114 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaatt > 1:922655/1‑161 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 2:1704992/1‑239 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 1:582686/1‑239 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGCATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 2:1231855/1‑239 (MQ=255) ttatAATGCCATGCACAAATAGGA‑AGAGGCCCCTAAAAACGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 2:1493605/179‑1 (MQ=255) tCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAg > 2:1193340/1‑239 (MQ=255) tCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGAAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAg < 1:1374375/239‑1 (MQ=255) aTTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:1493605/1‑182 (MQ=255) aggcaCCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACaga > 2:864357/1‑239 (MQ=255) tGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTaa > 2:1050901/1‑239 (MQ=255) aCGAAAAAAAAAAAATTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGt < 2:722565/239‑1 (MQ=255) | ATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGC‑ATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGT > NC_000913/2483029‑2483496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |