| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 433,649 | 0 | T | G | 32.5% | 72.1 / 19.3 | 83 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| Reads supporting (aligned to +/- strand): ref base T (14/42); new base G (23/4); total (37/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.48e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.40e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAG > NC_000913/433419‑433863 | tttGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCCCATGCCGAAGGACACGCGTTGCGTCTGGCGGGGGTGAAAAACAAAAGGTggagcc > 2:1494977/1‑233 (MQ=255) agagATCGGGCGCCTGAGGGCATAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTCCCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGGGCGGGTAAACCACAGGCCGAAGTACACGCGTTGCGTAGGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTca < 2:254881/239‑1 (MQ=255) gcgcgcCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGa < 1:1534709/239‑1 (MQ=255) gcCTGGAGGACTAAGCCGGGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAAGGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGGCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACCCGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAAcc < 1:285171/238‑1 (MQ=255) cTGGAGGACTAAGCCGTGCAGGACGAATATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTCCCACGCATCCCAACCCAAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTCCCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTA‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTg < 1:448339/239‑1 (MQ=255) aggaCTAAGCCGTGCAGGACAGGTATTACAGGGCGAGGGCGCTAAAGCTGGGGCAACGAGGACGTTTTACCACGCACCCCAACCCGAATGGCGGGTGCGTCATTGTCAAGGATGGAGAAATTGTCGGTGAGGGTTACCACCATCGGGCGGGTGAACCACATGCCAAGGTACCCGCGTTGCGTAGGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAg < 2:335197/238‑1 (MQ=255) aaGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAACCAAAGGTGCGACCCCCCATGTCACACTCGAACCCCGTAGCcatcat > 1:796039/1‑239 (MQ=255) tGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGAGGGCGAAATTGTCGGTGAAGGTTACCACCAACGGGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGa < 1:235040/198‑1 (MQ=255) aCGATTATTACATGGCGCGGGCGTTAAAGGTGGCGCAACGGGGACGTTTTACCCCGGCACCCAGCCCGAATTTGGGTTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGACCCACAGGCGAAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTa < 2:64568/234‑1 (MQ=255) aCGAGTATTCAATGGCCCGGGCGCTAAAGCTGGCGCAAGGAGGACGTTTTCCCACGCATCCCACCCCGAATGTCGGGGGCGTCATTGTCAAAGAGGGCGAAATTGTCGGTGAAGGTTACCCCCAACGGGGGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCAAAGGGGGCGACCGcc < 2:1031517/197‑1 (MQ=255) aCGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACg < 1:1766531/236‑1 (MQ=255) cGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAAAGAGGACGTTTCACCACGCACCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATGGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTAGGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:379627/238‑1 (MQ=255) cGAGTATTAAAGGGCGCGGGCTCTAAGGCGGGCGCAACGAGGACTTTTTCCCACACATCCCACCCCAAATGTGGGGGGCGTCATTGGCAAAGATGGCGAAATTGTGGGGGAAGGTTCCCACCACCGGGCGGGTGAACCACATCCCGAAGTACACGCGTGGCGTATGGCGGGTA‑AAAAACCAAAAGGTGGGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 2:17844/238‑1 (MQ=255) cGAATATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:1303127/238‑1 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCACCCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCCCCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAACCAAAAGGGGGCCCGCCtcttg > 2:235040/1‑194 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAACCAAAGGGGCGACCGCCTATGTCACACTCGCAACCTGTAGCCATCCTGGt > 1:1192323/1‑226 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACCCCCGAACCCTTTAGCCATCATGGGCGTACGCCCCCgc > 1:445074/1‑238 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGGGCGACCGCCTATGGCACACTCGAACCCCGTAGCCCTCAACGTCGTACGCCAc > 1:64568/1‑236 (MQ=255) tATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCAGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCt < 1:1825900/211‑1 (MQ=255) tATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCAGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTa < 1:673501/214‑1 (MQ=255) aTTACAGGGCGCGGACGCTAAAGCGGGCGCAACGAGGACGTTTTACCAGGCATCCCAGCCCGAATGTCGGGTGCGTCATTGTCAAAGAGGGAGAAATTGTCGGTGAAGGTTCCCACCAACGTGCGGGTGAACCAATTGCCGAAGTACGCGCGTGCGGAATGGCGGATG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:445074/238‑1 (MQ=255) aCATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAAGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCgg > 1:278756/1‑233 (MQ=255) cagggCGCGGGCGTTAAAGCTGGCGAAACGAGGACTTTTTCCCACGCATCCCACCCCGAATGTCGGTTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGACCCACATGCCGAAGTCCCCGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTa < 2:82107/206‑1 (MQ=255) cATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCccac > 1:1031517/1‑197 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGTCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGc > 2:199854/1‑238 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGGGACCGCCCATTTCACACTCCAACCCCGTAGCCATCATGGTCGTACGCCACCGTGCTGTGAAGc > 1:462287/1‑238 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCCCACTCGAAACCTGTAGCCATCATGGCCGTACGCCACCCTGCTGTGCCGc > 1:1185923/1‑238 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTATCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCCGTAGCCATCATGGTCGTACGCCCCCGTGCGGTGACGc > 1:1693702/1‑238 (MQ=255) gcgcTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTTCACGCGTTGCGTATGGCGGGGG‑AAAAAACCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAACCATCATgg > 1:82107/1‑209 (MQ=255) tGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGGCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATcgccgc < 1:308222/235‑1 (MQ=255) gagcgcAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTGGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTAAACCACATGCCGAAGTACACGCGTTGCTTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTgg < 1:1112930/236‑1 (MQ=255) cGAGGACTTTTTACCACCAATCCCAACCGGAAGGTCGGGGGGTTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTAACCCACATGCCGAGGAACACGCGGGGCGTATGGCGGGTG‑AAAAACCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTg < 2:1795685/179‑1 (MQ=255) gACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCCGTAGCCATCATGGTCGTACGCCACCGGGCTGTGAAGCACTCATCGCCGCTGGCGTAGCGCGCGTg > 1:1004509/1‑239 (MQ=255) ttttACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAAGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCTGGCGGAGCGCGCCTGGtt > 1:590221/1‑238 (MQ=255) ttACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTAACACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTCTGTCACACTCGAACCCTGTAGcccccat > 1:1795685/1‑174 (MQ=255) gCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCCCTCATCGCCGCTGGCGTAGCGCGCGGGGTTGCCTCGATGc > 1:939938/1‑239 (MQ=255) cATCCCACCCGAAAGGTCGGGTGCGTCATTGGAAAAGAGGGCGAAATTGTCGGTGAAGGTTACCCCCAGCGTGCGGATGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:590221/239‑1 (MQ=255) cATCCCACCCCGAATGGCGGGGCGGTCATTGTCAAAGATGGCGAATTTGTCGGGGAAGGTTCCCACCACCGTGGGGGTGAACCACATGCCGAAGTCCCCGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:36835/239‑1 (MQ=255) cATCCCAACCCGAATGTCGGGGCCGTCATTGTCAAAGATGGCAAAATTGTCGGGGAAGGTTACCCCAAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:939938/239‑1 (MQ=255) actCCCACCCGGAAGCTCGGGTACTCCATTGACAAAGGTGGCGAAATGGTGGGTAAGGGTTCCCCCCACGGTGGGGGTGACCCACAGCCCGAAGTACCCTCTTTGCGTATGGCGGGTG‑AAAAGGCCAAGGGTGGGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 2:1211666/237‑1 (MQ=255) aTCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCAAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 1:741649/238‑1 (MQ=255) cccAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGa > 1:36835/1‑239 (MQ=255) cccGAATGTCGGGTGGGTCATTCGCAAATGTGTCGAAATTGCCGGTGAAGGTCACCCCCAGCGTGCGGTTGAACCGCTTGCCGAAATCAACGAGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTAGGCCCGCCTATGTCACACTCGAACCCTGt < 1:1078728/154‑1 (MQ=255) ggggCGTAATTGTCAAAGAGGGGGAAATTGGGGGGGAAGTTTACCACCAACGGGCGGGTAAACCAAAGGCCGAAGTACACGCGTTGCGTAGGGGGGGTG‑AAAAAGCAAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCg < 2:1401522/192‑1 (MQ=255) gCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCCCCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGGGGGTA‑AAAAGGCCAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGc < 1:930949/238‑1 (MQ=255) tGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGACCCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:905064/154‑1 (MQ=255) tGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGt > 1:1401522/1‑195 (MQ=255) ggaaaaaGATGGAGAAATGGTGGGTGATGGTGACCACCAGCGTGGGGGGGACCCACATGCGAAAGTACACGCGTTGCGTGTGGGGGGTG‑AAAAACCCAAGGTTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGt < 2:441018/234‑1 (MQ=255) aaaGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGGGCGACCGCCCATGTCACACCCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGGCGCTGGGCGCGGACt > 1:1178784/1‑239 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAGACAAAGGGGCGACCGCCCATGTCCCACTCGCACCCCGTAGCCATCATGGTCGTAAGCCCCCGGGCtgtg > 2:905064/1‑154 (MQ=255) cGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGGGGTTGCCCCGATGCAAGATCCTAACCCGCAGGGCGCTGGGCGGGGACttt > 1:1828427/1‑233 (MQ=255) gAAATTGTCGGGGAAGGTTACCCCCAACGGGCGGGGAAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTc < 1:125162/238‑1 (MQ=255) tGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑GAAAAACCAAAGGGGCGACCCCCCATGTCACACTCCAACCCTGTAGCCATCATTGTCGTACGCCCCCGCGCTGTTTCCCACCCCTCGCCCCAGGCGTAGCGCGCGGGGGTTCCCCGCTGCAAGATCCCAACCCGCCCGTCGCGGGGCGCGGCCTTTACCGCCTGCac > 2:740489/1‑237 (MQ=255) gTTACCCCCAAGGTGGGGGTAAACCACATGCCGAAGTACACGCGTTGCGTAGGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCa < 2:278756/237‑1 (MQ=255) aaaCGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCAtt < 1:1354646/230‑1 (MQ=255) aCGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATgg > 1:1415023/1‑105 (MQ=255) aCGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTA‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATgg < 2:1415023/105‑1 (MQ=255) cGTGCGGGTGACCCCCATGCCGAAGTACACGCGTTGCGTAGGGCGGGTG‑AAAAAGCCAAAGGTGCGGCCGCCTATGt < 2:1072443/77‑1 (MQ=255) gTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:370687/113‑1 (MQ=255) cGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTca < 2:137230/75‑1 (MQ=255) cGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAGGTGCGACCGCCTATGTca > 1:137230/1‑75 (MQ=255) ggttGACCCACATGCCGAAGTACGCGCGTTGCGTATGGCGGTTG‑AAAAACCCAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACg < 2:1834923/103‑1 (MQ=255) gTGAACCCCATGCCGAAGTCCACGGGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGc < 1:1158577/189‑1 (MQ=255) gTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGCCAAAAGGGCGACCCCCCATGTCCCACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTTACGCACTCATCGCCGCTGGCGGAGCGCGCGCGGGTGCCTCCATGCCAGATCCTAACCCGCAGGGCGCCGGGCGTGGGCTTTTCCCGCCTCCACAGGCTGGCATTGTCgctcgccccct > 2:1354646/1‑225 (MQ=255) aacaacATGCGAAAGTACGCGGGTGGCGTAGGGCGGGGA‑AAAAACCCAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGCCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCtgatg < 2:1185923/239‑1 (MQ=255) aaCCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGaa > 1:1072443/1‑77 (MQ=255) aaCCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGGCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCtgatg > 1:1638805/1‑239 (MQ=255) aCCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAACCAAAAGGGCGACCGCCTATGTATCACTCGAACCCTGTAGCCATCAAGGTCGTACGCCACCCGGCtgtg > 2:370687/1‑113 (MQ=255) caTGCCGAAGTACACGCGTTGCGTATGGCGGGGG‑AAAAAGGCAAAGGGGCGACCGCCCATGGCACACTCGACCCCTGTAGCCATCATGGGCGTACGCCACCGGGCt > 1:1834923/1‑106 (MQ=255) tGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAACCAAAAGTGCGACCGCCCATGTCACACTCGAAACCTGTAGCCATCATGGTCGTACGCCACCCTGCTGTGACGCCCTCATCGCCCCCGGCGGAGCGCCCGTGGGTTCCTCCATGCAAGAACCTAACCCGCCGGGCGCCGGGGGGGGAGtttt > 2:1158577/1‑188 (MQ=255) cGAAGTCCCCGTGTTGCGTAGGGGGGGTG‑AAAAAGCCAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAg < 2:1828427/239‑1 (MQ=255) aGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCCAAGGGGCGACCCCCCATTTCACCCACCAAACCCGTAGGCATCATGGGCGTAAGGCACCGCCCTGTGACGGACCCCTCGCCCCCGGCGTAGCGCGCGCGGGTGCCCCTGTTCCAGATCCTTACCCGCCCGCCGCCGGGCCGCGGCTTTCCCCGCGGCAACACGCCGGCCCTGCGGTCCGCCACGGCGCGGTGATTAGTGGAGccc > 2:574692/1‑238 (MQ=255) gTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACg < 1:287094/217‑1 (MQ=255) tACCCGCGTTGCGTAGGGCGGGGA‑AAAAAGCAAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATcgccg < 2:1328189/114‑1 (MQ=255) tACACGCGTTGCGTATGGCGGGGG‑AAAAAGCAAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGc < 1:442910/196‑1 (MQ=255) ccgggTTGCGTATGGGGGGTG‑AAAAACCAAAAGGTGGCACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCaa < 1:844053/235‑1 (MQ=255) gCGTATGGCGGGGG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGGCGCACCCATCGCCGCTGGCGTAgc > 1:1328189/1‑114 (MQ=255) gCGTATGGCGGGGG‑AAAAAGCCAAAGGGGCGACCGCCCCTCTCACACTCGAACCCTGTAGCCATCATGGTCGGACGCCACCGTGCTGTGACGCACTCATCGCCGCCGGCGTCGCGCGCGTGGTTGCCTCGATGCAAGAGCCTAAACCCCAGGGCGCGGGGCGGGGGCTTTa > 2:104391/1‑171 (MQ=255) gTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACttt < 1:604269/168‑1 (MQ=255) gTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAg > 1:1561913/1‑231 (MQ=255) tG‑AAAAAACCAAAGGTGCGACCCCCCATGTCACACTCGAACCCCGTAGCCATCAAGGTCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCTGGCGGAGCGCGCGTGGGTGCCTCGGTGCAAGAACCCAACCCGCAGGTCGCCGGGCGCGGACTTTACCGTCTGCa > 2:604269/1‑168 (MQ=255) aaaGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGc < 1:63805/134‑1 (MQ=255) aaaGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGc > 2:63805/1‑134 (MQ=255) | TTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGTG‑AAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAG > NC_000913/433419‑433863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |