| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,383,722 | 0 | G | A | 30.6% | 124.0 / 19.2 | 63 | F80F (TTC→TTT) | ycjW | LacI family putative transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (40/3); new base A (1/18); total (42/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.28e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGG > NC_000913/1383490‑1383956 | cATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGaaaaa < 2:1070909/238‑1 (MQ=255) cTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTAcc > 1:1258975/1‑238 (MQ=255) cAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGCAAAA‑CGGATTACccgcc > 1:1541895/1‑239 (MQ=255) aaCTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTAccc > 1:714098/1‑235 (MQ=255) tGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGtt > 1:1269936/1‑239 (MQ=255) ccccaccGGAATATCATTTTTATCGAGTTGGG‑AAAAAATGCCTTCATCCGCTGGAGATCAGGGCATAATAATTCTTTTAATTATTTTCTGCTTATTTTTTCTTTCGCTTTTTTGCAGTTCTTCTGCCGGTTTGTGCGACGTTTGTAATATCCCGTAAAAACCTTCTTCTTAATCTTT‑GGGGGT‑GATGTCAGGAAAAACTTAAAAAAAAAG‑CGGATAACCCGCCGTAGTTTTGGTCGAAc < 2:1480416/237‑1 (MQ=255) atatCATTTTTATCGAGTTGGGCAAAAAATGCC‑TCACCCGCTGGCGAACTGAGAATAATAATGCTTTTAATCTTTTTCTGTTTAATTTTGCTTTCGCTTTTTTGCAAATCTTCTGCCGGATTGTGCGCCGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAAAAAAA‑CGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 1:63373/239‑1 (MQ=255) tatTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCAt > 1:405878/1‑239 (MQ=255) tatTTATCGAGCTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTGTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCAt > 1:1781295/1‑239 (MQ=255) ttATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTCCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAAt > 1:1829752/1‑239 (MQ=255) aTCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAC‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATg > 2:965089/1‑238 (MQ=255) aTCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAAATGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATg > 1:221704/1‑238 (MQ=255) cGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTTTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTCGTAATATCACGCCGATACCTTCTTCTTAAGTCTT‑GGCGGT‑GATGGCATGCAAACCTTCAGATCAAAA‑CGGACTTCCCGCCGTAGTTTTGGTCCAACCGGTCGAAATCACCATAATGGCa > 2:825406/1‑239 (MQ=255) ttGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGaa > 1:669858/1‑220 (MQ=255) ttGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCaa > 1:1462251/1‑239 (MQ=255) ggCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATAACCATAATGGCATCaaaa > 2:234880/1‑238 (MQ=255) aTCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATg > 1:1129785/1‑214 (MQ=255) ccGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATaa > 1:859468/1‑210 (MQ=255) ggCAAACTGAGCATAATAATGCCTTTAATCATTTTCTGTTTAATTTTGTTTTCGCTTTTTTGCAGATCTTCTGCCGGATTGGGCGCCTTTTGTAATATCACGTCAAACCCTTCTTCTCCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAAAAAAA‑CGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGc < 1:462155/239‑1 (MQ=255) aatattGCTTTTAATTTTTTTTTGTTTATTTTTGTTTTCGATTTTTTGCAGTTCTCCTGCGGGTTGGGGCGAGGTTTTAAAAACCACGTCAAAACTTCCTTC‑TCCGCTTTGGGGGGT‑GAGGGAATGAAAACCTTAAGAAAAAAA‑CGGTTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt < 2:1860615/239‑1 (MQ=255) tGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAAATTCAGAGAAAAA‑CGGATTACCAGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGAt > 1:1790068/1‑237 (MQ=255) tcTTTATTCTTTTTCTTGTTAATTTTGTTTTCGTATTTTTCAAGATCTTCTGCCGGATTGGGGGGCTTTTGTAATACCCCGTCAAAACCTTCTTTTTCAGTTTT‑GGCGGT‑AAGGGGAGAAAAAACTAAAGAAAAAAA‑GGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATAc < 2:1310520/236‑1 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTaa > 1:1560467/1‑239 (MQ=255) ttAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAAAATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTaa > 1:1800448/1‑239 (MQ=255) tAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAAAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGAGCGCTGGCCAGCTTGTTTGGCTGCTACTGCAAt > 2:1390855/1‑239 (MQ=255) ttaTTTTCTAATAATTTTTGTTTTGCTATTTTTGCAGATCTTGCACCGTTTTGTGGGGCGTTTTTATTACCGGGAGAAGACCTTTTTCTTCGTCTTT‑TGCGGT‑AATGGAAACAAAAACTAAAAAGAAAAA‑GGATTTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 1:1649998/167‑1 (MQ=255) tttCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATTACCATAATg > 1:1357479/1‑175 (MQ=255) cTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGTTTGTGCGACGTTTGTAATATCACTTCGAAACCTTCTTTTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCAACATAAtt > 2:1649998/1‑168 (MQ=255) tcctccGTATTGTGCGATTTTAGAAATATCACGTAAAACCCTTCTTCTCCATTTTT‑GGCGTT‑GATGGCATGAAAAACTCAAGAAAAAAA‑CTAATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACGCTTTTTCGCGCGCTTCCGGGGAGat < 2:405878/235‑1 (MQ=255) ctGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCaa > 1:1588113/1‑144 (MQ=255) ggATTGTGCGATGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGCGATATTAGt > 1:1738564/1‑239 (MQ=255) gATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGtt > 1:318053/1‑239 (MQ=255) tgtgCGACGTTTGAAATTTCCCTTC‑AAACCTTTCTTTTAGACTTT‑GGGGGTGGATGGCAGGCAAAACTTCAAAAAAAAA‑CGATTTACCCGCCGTAGTGTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGc < 2:714098/239‑1 (MQ=255) tgCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCtt > 1:895084/1‑239 (MQ=255) tttGTAATATCCCGTCGAACCTTTCTTCTTCAGTTTG‑GGGGGG‑GAGGGCATGAAAACCTTAAGAAAAAAA‑CGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAAt < 1:948294/109‑1 (MQ=255) tGTAATATCACGTCGAAACCTTCTTCTTCAGTTTG‑GGCGGT‑GATGGCATGCAAACCTTCAGAAAAAAC‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATa < 2:275103/167‑1 (MQ=255) gTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCAc > 1:1325859/1‑238 (MQ=255) ataatCACGTAGAACCCTTTTTCTTAAGTTTG‑GGCGGT‑GATGGCATACAAAACTGAAAAAAAAAA‑CGAATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCAcgcg < 2:1462251/236‑1 (MQ=255) cACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATg > 2:948294/1‑109 (MQ=255) cACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGAt > 1:531182/1‑238 (MQ=255) aCGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATAc > 2:1348496/1‑239 (MQ=255) cGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAAttct > 1:275103/1‑167 (MQ=255) cGTCGAAACCTCCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCTTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACg > 1:1777165/1‑239 (MQ=255) tCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGt > 1:349986/1‑239 (MQ=255) aaCCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGAt > 1:696540/1‑239 (MQ=255) cttcttcttCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCt > 1:890706/1‑144 (MQ=255) ttctcttcAGTTTG‑GGGGGT‑GAGGGCATGAAAAACTTAAGAAAAAAA‑CGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGa < 2:689572/141‑1 (MQ=255) tcttcttcAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAGACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTAtt > 1:189278/1‑212 (MQ=255) ttcttcAGCTGT‑GGTGGT‑TGTGGCATGAAAAACTTAAAAAAAAAG‑GGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATa < 1:274030/239‑1 (MQ=255) cAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGTGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACg > 1:1821542/1‑236 (MQ=255) cAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACg > 1:1481396/1‑236 (MQ=255) cTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAATAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCCCGCGCGATACGGCGGATTTTGATACGCCTGCa > 1:1247538/1‑239 (MQ=255) cTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAAtt > 1:689572/1‑144 (MQ=255) ggCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAAc > 1:1541188/1‑237 (MQ=255) gATGCCATAAAAACCTTGAGAAAAAAG‑CGTATGACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:895084/238‑1 (MQ=255) catgcattacAAACCTACAGAAAAAAC‑CGGTTACCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATAGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:1269936/229‑1 (MQ=255) gttgccagaaaaaCCTCAAAAAAAAAGCGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCa < 2:1247538/229‑1 (MQ=255) aaaaaaaaCTTAAGAAAAAAA‑CGAATGCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCAc < 2:837249/188‑1 (MQ=255) aaaaaCTTAAGAAAAAAC‑CGGATTCCCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATc < 2:349986/233‑1 (MQ=255) aaaCTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAAta < 1:1348496/239‑1 (MQ=255) aCTACAGAAAAAAC‑CGGATCACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATaaa < 2:406657/235‑1 (MQ=255) tCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACg > 1:837249/1‑192 (MQ=255) cAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAGATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAggg > 1:323984/1‑239 (MQ=255) | CATATTGACCTTCAACTTTGCCAATCACCACCACCGGAATATCATATTTATCGAGTTGGGCAAAAAATGAC‑TCATCCGCTGGCGAACTGAGCATAATAATGCCTTTAATCATTTTCTGCTTAATTTTGCTTTCGCATTTTTGCAGATCTTCTGCCGGATTGTGCGACGTTTGTAATATCACGTCGAAACCTTCTTCTTCAGCTTT‑GGCGGT‑GATGGCATGCAAAACTTCAGAGAAAAA‑CGGATTACCCGCCGTAGTTTTGGTCGAACGGGTAGAAATCACCATAATGGCATCAAAACCCGAAGAGGTCAGCGCGCGGGCCAGCTTGTTTGGCTGATACTGTAATTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGG > NC_000913/1383490‑1383956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |