| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 345,328 | 0 | C | A | 31.1% | 181.6 / 24.0 | 74 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (43/8); new base A (0/23); total (43/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.56e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAG > NC_000913/345096‑345564 | ctTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCaaaaa > 1:866856/1‑238 (MQ=255) gATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCTATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGc > 2:412307/1‑238 (MQ=255) gATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGc > 1:94571/1‑238 (MQ=255) tgATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAaga > 1:536595/1‑238 (MQ=255) aTCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCTATTAGCTCATCAGGAAGAGCa > 2:29876/1‑239 (MQ=255) cGACACTTCGCTAAAAAAACC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGT‑TTTATAAAAAATGATCTCATGCAGATTTTTTGTAAATGTTTTGTTTGAAATTCATATAAAAAAAATCATAATCCCATCATTTTTGTGGGGGTTTTTTTCTTTA‑TCTTCCGCATCGCCCTCAAGCCTGACAAAAAATATGCTGTAAGCCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAgacg < 1:88991/238‑1 (MQ=255) gACACTTCGCTAAAAAAAGC‑ACCAGTAGTGTTTTCGC‑AGCCATGCGG‑TTTATAAAAAATGATCTCATGCAGATTTTTTGTAAATGTGTTGGTTGACATTCATATAAAAAAAATCATAATCCCATAATGTTTGGGTGGGGTTTTTTCTTTA‑TCTTCCCCACCGCACCCAACCCGAAAAAAAAATATGCGGAAAGGCT‑AATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAgacgac < 1:412307/239‑1 (MQ=255) ccgcaaaaaaaGCAACAAGGGGTGTTTTGGC‑AGGCATGGGT‑TTAAAAAAAAATATTCACAAGAAGTTTTTGTGTGATTGTGTTGGTAGCCATTAATAAAAAAAAAATCATATGTCCATCATTTTGGTGGGGGGTTTTTTTTGTA‑TCTTACACAGCGCCCGAAACCCAGAAAAAAAAGTTGCTGAAGGACA‑AATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAg < 2:536595/234‑1 (MQ=255) gataaaaaaaGC‑ATCGTTATTGTTTTC‑C‑AGCCATTGGTTTGTAAAAAAAATAATCTAATTCATTTTTTTTTTGAATGTTTTGTTTGACATTAAAATAAAAAAAACCATAATCCAATCTTGTTTGTGTGGGGTCTTTGTTGTA‑TCTTCCCAACCACCCTCAAGCCTAAAAAAAAATATTGTGTCAGCCT‑CATTTAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGa < 2:262575/235‑1 (MQ=255) aataaaaaaaCC‑CCCGGTGGTGTTTTCGC‑AGCCTTGGGG‑TGTAAAAAAAATGATCTCATGCAGTTTTTTGGTGAATGTGTTGGTGGACATTAATAAAAAAAAAATCATAATTCCATCATGTTTGGGGGGGTTTTTTTCTGTA‑TCTTACGCACCGCACTAAAGCCTGAAAAAAAATAGGCTGAAGGGCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGa < 2:338070/235‑1 (MQ=255) aaaaaagGC‑ACAAGTGGT‑GTTTCGCGAGCCATGTGG‑TTTAAAAAAAATGTTCTCATGAATTTGTTTGGGGAATTTTTTGGTTGACTTTAATATAAAAAAAACAAAAATTCCACCGTGTTTGTGGGGGTTTTTTTCTGTT‑TCTTACGAACCCCCCCCAACCTTAAAAAAAAATAGGTTGAAGGCCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttg < 2:866856/238‑1 (MQ=255) c‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGaa > 1:878844/1‑209 (MQ=255) cccatgagtGTTTTAGC‑AGCCATGGGG‑TTTAAAAAAAAGTATTCAATGAAAGTTTTTTGGAAATGTGTTGTTTACCATTCATATAAAAAAAATCATAATCCAATCATTTTTGGGGGGGGTTTTTTCGGTA‑ACTTCCCCGCCCCCCTAAACCCTAAAAAAAAATGGGTTGAAGGGCT‑AAAAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTa < 1:966849/229‑1 (MQ=255) aCCAGTGGTGGTTTCGC‑AGCCATGCGT‑TTAAAAAAAAATGATCTCATGCAGATTTTTTGTGAATGTTTTGGTTAACATTCATATAAAAAAAATCATAATTCCATCATGTTTGTGTGGGTTTTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAAAAAATATGTTGAAGGGCT‑CATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTa < 1:52009/235‑1 (MQ=255) tttCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATTTTTTGTAAATGTGTTGTTTGACTTTAATAAAAAAAAAACCAAAATCCCATCATTTTTTTGGGGGTTTTTTTCTTTA‑TTTTCCCCACCACACACAACCCGAAAAGAAAATATGCTGT‑AGGCTAAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGa < 2:886860/239‑1 (MQ=255) tgtATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGt > 1:504153/1‑238 (MQ=255) tgtATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGt > 1:111529/1‑238 (MQ=255) tataAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTa > 1:703382/1‑211 (MQ=255) aaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACttt > 2:92542/1‑239 (MQ=255) aTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCa > 1:669309/1‑239 (MQ=255) tttGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCTATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa < 1:29876/239‑1 (MQ=255) tttGAGAATGTGTTGGTTGATATTCATAAAAAAAAAATCATAATTCCATCATTTTTGTGTGGGTTCTTTTTTGTA‑TCTTCCGCACCGCACTCAACCCGGACAGAAAATAGGCTGTAAGCCT‑CAAATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa < 1:189414/239‑1 (MQ=255) gttGTGAATGTTTTTGTTGCATTTCATATGAAAAAAACCAAAATCCCATAAGGTTTGTGTGGGGTCTTTTCTATA‑TCTTACCCACCGCACCAAACCCTGACAAAAAATAGGATGTAAGGCT‑AATATAAAAACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa < 2:723971/238‑1 (MQ=255) tgtgAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGGA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGAt > 1:1017803/1‑238 (MQ=255) aaTGTTTGGGTTGAATTTAATAAAAAAAAAACAAAAATCCCATCATGTTGGTGGGGGTTTTTTTCTGTT‑TTTTACGCACCCCACTCAGGCCGAAAAGAAAAAATGCTGAAAGGCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcccc < 1:629230/238‑1 (MQ=255) aTGTGTGGGTTGAATTTCATATAAAAAAAATCATAATTCCATCATGTTTGTGGGGGGTTTTTTTTGTA‑TCTCACCCACCCCCCTCAACCCTAAAAAAAAATATGCTGAAAGCCT‑AATATAAAAAACCGCCATTAGCTCATCAgg < 2:90882/144‑1 (MQ=255) tgACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAgac > 1:90882/1‑144 (MQ=255) tttataaaaaaaaaaTCAAAATCCTATCTTTTTTGTGTGGGTTTTTTTCTTTA‑TCTAACGCACCCCACCCAACCCTGAAAAAAAATATTCTGTAAGCCT‑AAAAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCa < 2:504153/231‑1 (MQ=255) atatGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAg > 1:191295/1‑239 (MQ=255) aaaaaaaTCATATTCCCATCATGTTTGGGTGGGGTTTTTTCTGTA‑TCTGACGCACCCCACCAAAGCCTGAAAAAAAATATGCTGAAAGGCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGaa < 1:804623/239‑1 (MQ=255) aaaaaTCAAAACCCCATCTTTTTTGTGTGGTTTTTTTTCTTTA‑TCTTACGCACCGCACTCAACCCTGACAAAAAATATGCTGTAAGGCT‑AATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACa < 2:198448/239‑1 (MQ=255) aaTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACAtt > 2:704972/1‑238 (MQ=255) aaTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACAtt > 1:111416/1‑238 (MQ=255) atttCCATAATG‑TTGTTGGGGGTTTTTTTTGTATTCTTACCCATCCACCCCAACCCTAAAAAAAAATAGGCGATAAGCTT‑AAAACAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTg < 2:258508/237‑1 (MQ=255) ccaatgatGTTTGTGGGGTGTCTTTTTTGTT‑TCTTACGCACCCCACTAAAGCAGGAAAGAAAAGATGCTGTAAGGCT‑AATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGttt < 2:977602/233‑1 (MQ=255) cttcttttttGGGTGGGTTCTTTTCTTTC‑TCTTACACACCCCACTAAACCCTAACAAAAAATGTGTTAAAAGGCT‑AATATCAAAAACCGCCATTAGCTCACCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTgg < 1:532706/232‑1 (MQ=255) tcatGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCt > 1:258508/1‑239 (MQ=255) tGTTTGTGTGGGTTTTTTTCTGTA‑TCTTACGCATCGCACTAAAGCCTGAAAGAAAATAGGGTGTAAGGCT‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTAtt < 1:699381/239‑1 (MQ=255) tGTTTGTGTGGGTTCTTTTCTGAA‑TCTACCACATCGCACTAAACCCTGACAGAAAATATGCTGTAAGCAA‑AATATAAAGACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGCCGGTCCAACTTTTCAAAGCTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTAtt < 1:442496/239‑1 (MQ=255) tttGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACTGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCa > 1:187493/1‑239 (MQ=255) tgtgtgGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAAAATTGCCATTGTTTGGCTATTCAgg > 1:422209/1‑239 (MQ=255) gtgtgGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAGAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa > 2:492658/1‑239 (MQ=255) tgtgGGTTTTTTTCTGTA‑TCTTCCGCACCGCACCCAAGCCTGACAAAAAATATGCTGAAAGTCA‑AATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcccc < 2:961879/187‑1 (MQ=255) gtgGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATg > 1:372895/1‑239 (MQ=255) ggTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGA‑GCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCa > 1:719712/1‑239 (MQ=255) gTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCa > 1:413337/1‑239 (MQ=255) tttCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGTCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatcat > 1:961879/1‑187 (MQ=255) ttttttA‑TCTTACGCACCACACCCAAGCCTAACAAAAAATATGCTGAAAGCCT‑CATACAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTg < 2:65260/159‑1 (MQ=255) tCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCaa > 2:92702/1‑239 (MQ=255) gTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGa > 1:824657/1‑239 (MQ=255) a‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGaaa > 1:727745/1‑239 (MQ=255) cTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCa > 1:590920/1‑185 (MQ=255) tACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGCTGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCCATCCAGGATGGGGCAGACCAATGtaaaaa > 2:258952/1‑238 (MQ=255) tACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTGAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGaaaaaa > 2:350620/1‑238 (MQ=255) tACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcc > 1:65260/1‑164 (MQ=255) gCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGcc > 2:366447/1‑238 (MQ=255) accccacacaACCCTGAAAAAAAATATGCTGAAAGGCA‑CATAAAAAAACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcac < 2:413337/235‑1 (MQ=255) gccaccacAAGCCTGACAGAAAATATGTTTTAATGCT‑AAAACAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcaca < 2:111416/232‑1 (MQ=255) cGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcacac > 2:180468/1‑239 (MQ=255) cGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGAGGGCGGGCCAACTTTTCAAAACTTCTCTGAATCAGATCCCCttatt > 2:401357/1‑164 (MQ=255) cACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAg > 1:866813/1‑239 (MQ=255) gACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTggg > 2:864141/1‑239 (MQ=255) aGAAAATATGCTGTAAGGCT‑CATATCAAAAACTGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTg < 2:187493/239‑1 (MQ=255) aaaaTAGGCTGAAAGCAT‑CATAAAAAAAGCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGaa < 2:669309/239‑1 (MQ=255) aaaTATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGaaa > 2:682846/1‑239 (MQ=255) gCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCC‑‑TATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTggg > 2:851849/1‑225 (MQ=255) gCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCC‑‑TATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTggg < 1:851849/225‑1 (MQ=255) gTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCt > 1:839252/1‑174 (MQ=255) aaGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTaa > 1:386441/1‑239 (MQ=255) cT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGa < 1:704972/238‑1 (MQ=255) atatCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGagag > 1:403853/1‑211 (MQ=255) atCAAAAACCGTCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAAGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAg > 1:983185/1‑239 (MQ=255) atCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAggg > 1:420913/1‑204 (MQ=255) atCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAggg < 2:420913/204‑1 (MQ=255) | CTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGC‑ACCAGTAGTGGTTTCGC‑AGCCATGCGG‑TGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCT‑CATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAG > NC_000913/345096‑345564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |