| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,782,919 | 0 | T | A | 31.1% | 41.4 / 12.2 | 53 | D248V (GAT→GTT) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Reads supporting (aligned to +/- strand): ref base T (11/20); new base A (14/0); total (25/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.86e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.77e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCAGCAGCTG > NC_000913/3782686‑3783157 | tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGGACAGGGAAGCACCAG‑ATCGCCa > 1:910837/1‑239 (MQ=255) aaTGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑AACGCCaa > 1:175273/1‑238 (MQ=255) ccTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCG‑C‑CTGGGTTTCGGTCACGGTAAACACCAA‑ATCGCCCAACC‑CCGcc > 1:650708/1‑239 (MQ=255) cTCGCGCGCGTTTTTTCCGAAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAGGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCGCCTGCCCAATCTTCTCCGGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCG‑A‑CTGGTTGTCGGTACGGGTAAGCACCAG‑ATCGCCAAGCC‑CCGcc < 1:306065/238‑1 (MQ=255) cgcgcgTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCG‑A‑CTTGTTTTCGGTACAGGTAAGCCACAG‑AACGCCCAccc‑cccccccgc > 1:165547/1‑234 (MQ=255) cgcgcgTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTTTCGGTACAGGGAAACACCAA‑ATCGCCAAACC‑CCCCCCTGc > 1:99926/1‑238 (MQ=255) cgcgcgTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAAGCG‑ACCTGGTTTTC‑GTACAGGTAAGGACCCA‑AACGCCCAACC‑CCGcccagc > 2:277147/1‑234 (MQ=255) tataATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTGGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGGCCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGcc < 1:691449/216‑1 (MQ=255) tataATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CGGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCAt < 1:139619/218‑1 (MQ=255) tataATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGcc < 1:806536/211‑1 (MQ=255) tataATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCa < 1:86845/217‑1 (MQ=255) taaatcCTTAATAATTTCCCTCGGTTTTGGGCTTTACAACGCCGAAGCGAGGCGCCGGTTGGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCGGACCGAGCATCATGCCAAAACGGCGGTTCCGCG‑A‑CTGGTTGTCGGTACAGGAAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAg < 2:856269/232‑1 (MQ=255) taCTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACACC‑A‑CTGGTTGGTGGGACAGGTAAGGACCAA‑AACGCCAAGCC‑CCCCCATGCCCATAAAAGGGGGAGGGGCGGCa > 1:514107/1‑238 (MQ=255) ccTTGATAAATTTCCGCGGTTATGGGCATTTCACCGCCGAAGCGAGGCGCCGGTCCCCGGACTTCTTTCGTATTGCGGTACCCTCCCCCCACCTGACCAATCTTCTCCTGCGCGTTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTGGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCAcc < 2:544965/238‑1 (MQ=255) aCTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCCCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCAAAAACGGGGGTTACGCG‑A‑CGGGTTGTCGGTACAGGTAAGCCCCAG‑ATCGCCAGGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCAcc < 1:399286/239‑1 (MQ=255) cTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGGACAGGTAAGCACCAA‑AACGCCCAACC‑CCGCCATGCCCCTAAAGGTGGCAGGGTCGGCAcc > 1:856269/1‑238 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGGTGTTGGGACAGGGTAACAACAA‑AACGCCAAACC‑CCCCCCAGCCCCCAAAAGTGGGAGGGTCCGCAccccc > 2:957627/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGGTGTCGGTACAGGTAAGCACCAA‑AACGCCAAGCC‑CCGCCCTGCCCATAAAAGTGGGAGGGTCGGCACCCAg > 1:52483/1‑238 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCC‑C‑CTTGTTGTCGGTCACGGTAAGTACCCA‑CTTGCCCAACC‑CCCCCCTGCCCCCAAAg > 2:139619/1‑218 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCG‑C‑CTGGTTGTCGGTACAGGGAAGCCCCAA‑AAGGCCAAACC‑CCGCCCTGCCCACAAAGGTGGGAGGGTCGGccaccaa > 1:627605/1‑232 (MQ=255) gATAAATTTCCCCGGTTATTGGCATTTCACCGCCGAAGGGATGGGCCAGTTCTCGGACTTCTTTCGTATTGCGTTAGCCTTCCACCACCTGCCCAAACTTCTCCTGCGCGCTTTGG‑ACATCCATGCCCTGACCGAGCATCATGCCAAAAAGCCGGTTACGCT‑A‑GCGGGTGCCAGCACAGGGAAGGCCCCG‑TTCGCCAACCCACCCCCAT‑CCCATAAACGTGGGAGGGTCTGCAccaccc > 2:368132/1‑235 (MQ=255) tAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑C‑CTGGTTGTCGGGACAGGTAAGCACCAG‑AACGCCAAACC‑CCCCCATGCCCATAAAAGTGGCAGGGGCGGGACCCcgcg > 1:544965/1‑238 (MQ=255) tatttGGCATTTCACCGCGGAGGCGAGGCGCCAGTTCGCGGACTTCTTTCGTATTCCGGAACCCTCCCACCCCCGGACCATCCTTCCCTTGCGCGTTTTGA‑CCACCCAGGCCCTGACAGAGCATCATGCCAAAACGGGGTTTACGCG‑A‑TGGGTTGTCGGGAGAGG‑AAGGCCCAGAACCGCAACGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcg < 2:650708/235‑1 (MQ=255) tATTGGCTTTCCACCGCCAAGGGGATGCGCCATTTCGCGGACTTGTTGCGTTTTGCGGTCGCCTCCCCCCCCCTGACCAATCTTCTCCTGCGCGCTTGTT‑ACATCCATCCCCTGACCGCGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTCTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGAcgcg < 2:514107/239‑1 (MQ=255) gCCGAAGGGATGCGCCAGTTCGCGGCTTTTTTCCGTATTGCGGTAGCCTTCCCCCACCACACCAATCTTCTCCGGCGCGTTTTGT‑ACATCCAGGCCCGGACCGAGCACCATACCAAACCGGCGGTTCCGCG‑A‑CGGGTTGTGGGTACAGGAAAGCACCAG‑ACCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCagccagcc < 2:789654/239‑1 (MQ=255) gCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATAATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCagccagcc < 1:605095/239‑1 (MQ=255) gCCGAAGCAGTACGCAAGTCCGCGGTCTTCTTTCGTATTGAGGTCGCCTTCCCCCCCCTGACCATTCTGCTCCTGGGCGATTTGT‑ACATCCATCCCCGGACCGACCAACATGCAAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCCCCAA‑ACCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTcagccag < 2:946323/237‑1 (MQ=255) cGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCa < 1:277147/239‑1 (MQ=255) cgcgccgcCAGTCCGCGCACTTCTTCCGTATGGCGTTACCCTCCCCCCACCTGACCAATCTTCCCCTGCGCGCTTTGT‑ACACCCATGCCCTGACCGAGCATCATGCCAAACCGGCGGTTACGCG‑C‑CTGGTTGTCGGTACAGGTAAGCCCCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACgg < 2:609157/232‑1 (MQ=255) cgagccccaggTTCGCGACCTTCTTTCGTATTGCGGTGCCCTTCCCCCCCCGAACAATTCTTCCCCTGGGCCTTATGT‑CAACCCAGGCCTCACCCGGGCATCAGGCCAAACCGGCGGTTCCCGG‑A‑CTGGTTGCCGGTAAAGGTAACCCCCAG‑ATCGCCAGGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACgg < 2:718953/227‑1 (MQ=255) tGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCCTGCCCCTAAAGGTGGCAGGGTCGGCACCCCGCGCCGCACCAAGACGCGCCCTTTCAGCCAGCCCACGGGGGa > 1:789654/1‑238 (MQ=255) tGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTAAGCG‑A‑CCGGGTGTCGGTACAGGTAAGCACCAA‑AACGCCAAGCC‑CCGCCCCGCCCATAAAAGAGGCAGGGGCGGCCCCCAGCGCCCCACCAAGACGCGACACTTTACCCCACCCCCggggggt > 2:583289/1‑235 (MQ=255) gcCAGTTCGCGGACTTCTTTCGTATTGCGGTACCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCCCCAG‑ATCGCCAAGCC‑CCGCCATGCCGATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAg < 1:957627/239‑1 (MQ=255) ttctCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCCCCAACCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACgg < 1:366907/177‑1 (MQ=255) tcCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGGTGTTGGTACAGGTAAGGACCAA‑AACGCCAAACC‑CCGCCAAGCCCATAAAGGGGGCAGGGGCGGCCCCCACCGCCCCACCAAAACGCGACATTTCCGCCACCCCCCCGGGGGTCAACCCCCTACACCCCCTCCGACCCAAACCCAAACCGTCGGACATCCCCGCAcccaagg > 2:893668/1‑233 (MQ=255) cggcccgtttGTAACACCCATGCCCGGCCGGAGCAGCAGACAAAAACGGGGGTCACGCA‑G‑CGGGTGGGCGGAACAGGAAAGCCCCAA‑CCCCCAAACCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCCCCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCaa < 2:165547/232‑1 (MQ=255) cgcgcTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCG‑G‑CTGGTTGTCGGGACAGGGAAACACCAA‑AAAGCCAAGCC‑CCCCCACGCCCCCAAAGGGGGCAGGGGCGGCACCCACCGCCGCACCCAAACGCGACAATTCAGCCAGCCCCCGGGGGGTCAGCGCCGCACCCCCCCTCCCCCCAAAACCCCAACCCCCCGACATCCCCGcccccccggccacaa > 2:965407/1‑228 (MQ=255) ttt‑ACATCCATGCCCTGCCCGAGAATCATGCAAAACCGGCGGTTACGCG‑A‑CTGGTTGTCGGTAAAGGAAGGCACCAG‑ACCGCCAGCCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACgg < 2:983775/160‑1 (MQ=255) aTCCACGCCCTGCCCGAGCATCATCACAAAACGGCGGTTCCGCG‑C‑CTGGTTGCCGGTCCAGGAAACCACCAG‑ACCGCCACGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcg < 2:99926/239‑1 (MQ=255) ccATGCCCTGACCGAGCATCATGCCAAAACGGGGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGa < 1:140539/202‑1 (MQ=255) tGCCCTGACCGTGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGGAAGCACCAG‑AACGCCAAACC‑CCGCCCTGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTTAGCCAGCCCACGGGTGATCAacg > 1:983775/1‑162 (MQ=255) aCCGAGCATCATGCCAAAACGGCGGTTACCCG‑A‑CTGGTTTTCGGTACAGGTAAACACCAG‑AACCCCCAGCC‑CCGCCAATCCCCTAAAAGGGGCCGGGTCGGCACCCCCCCCCCCCCCCCAACGCGACATTTCACCCCCCCCCCCGGGGATCAGCCCCCTCCCCGCCTCCGCCCCCAAACCCACACCCCCGGACATCCCCCCCCCCACAGCCCTAACGTTTTTTACCGCgccgccca > 2:85680/1‑234 (MQ=255) catcagCCAAAACGGCGGTGTCGCGCA‑CTGGTAGCCGTGACAGGTAAGCCCCAG‑ACCGCCAACCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa < 2:52483/231‑1 (MQ=255) taacgCCAAACCGGCGGTTCCGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑GTCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCa < 1:965407/235‑1 (MQ=255) ccAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGAAAGCCCCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAGCCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAAt < 1:983517/236‑1 (MQ=255) ggcggTTACGCG‑A‑CTGGTTGTCGGTACAGGAAACCACCAG‑ACCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa < 1:963914/239‑1 (MQ=255) gTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGaa > 2:297446/1‑237 (MQ=255) gTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa > 2:753717/1‑210 (MQ=255) gTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa < 1:753717/210‑1 (MQ=255) cACCAG‑ATCGCTAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGCCATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGCAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgca > 1:1002992/1‑239 (MQ=255) ccAT‑ATCCCCAGGCC‑CCGCCATCCCCATAAAGGGGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAGCCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgcagc < 2:1002992/239‑1 (MQ=255) g‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgcagca > 2:907365/1‑237 (MQ=255) g‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGcagcag > 1:673859/1‑238 (MQ=255) tCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCAGCAgctg < 1:67343/239‑1 (MQ=255) | TCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGT‑ACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCG‑A‑CTGGTTGTCGGTACAGGTAAGCACCAG‑ATCGCCAAGCC‑CCGCCATGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCAGCAGCTG > NC_000913/3782686‑3783157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |