Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,985,1120CG23.1% 341.7 / 93.9 156intergenic (‑43/+27)araG/araFL‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base C (63/57);  new base G (13/23);  total (76/80)
Fisher's exact test for biased strand distribution p-value = 9.12e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 171 total aligned reads displayed.

CGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGT  >  NC_000913/1985015‑1985210
                                                                                                 |                                                                                                  
cGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATTCGGGGTAGACTGTTGCATAGCGTCTCCGTGAATCACTGGTCGTTCGCACCCCCTCTGcatca                                                                                                   <  2:2858077/99‑1 (MQ=255)
cGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGcatca                                                                                                   >  1:3928121/1‑99 (MQ=255)
 gggAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGcatgat                                                                                                  >  2:2247118/1‑99 (MQ=255)
  ggAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGCAGACTGTAGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATg                                                                                                 >  1:4923335/1‑99 (MQ=255)
   gAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGc                                                                                                >  1:1980557/1‑99 (MQ=255)
   gAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGc                                                                                                <  2:4544247/99‑1 (MQ=255)
    aaaCGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCa                                                                                               <  1:3536778/99‑1 (MQ=255)
      aCGTTTTAGCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCaga                                                                                             >  2:1116784/1‑99 (MQ=255)
      aCGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCaga                                                                                             <  1:3103679/99‑1 (MQ=255)
       cGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCagag                                                                                            >  2:2486044/1‑99 (MQ=255)
        gTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgg                                                                                           <  1:5101002/99‑1 (MQ=255)
        gTTTGACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCTTAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgg                                                                                           <  2:2832065/99‑1 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggg                                                                                          <  2:602615/99‑1 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggg                                                                                          <  1:1874471/99‑1 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggg                                                                                          <  2:1399999/99‑1 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCCTGCAGCggg                                                                                          >  1:2473066/1‑99 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAggg                                                                                          <  2:3095283/99‑1 (MQ=255)
         ttttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGAATGATGCAGAggg                                                                                          <  2:351705/99‑1 (MQ=255)
         ctttACCGATGCCGCGAAACGTGAGTTATGTGGTTTTCTGTTGCGTAACGTCTCCGTGACTCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggg                                                                                          <  2:3955126/98‑1 (MQ=255)
          tttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgggg                                                                                         <  1:3790851/99‑1 (MQ=255)
          tttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgggg                                                                                         <  1:955128/99‑1 (MQ=255)
          tttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgggg                                                                                         <  2:163338/99‑1 (MQ=255)
          tttACCGAGGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCAGAACGTCTCCGTGAATCACTTGTCGTTCACACCCCCTCTGCATGATGCAGAgggg                                                                                         <  1:1062181/99‑1 (MQ=255)
           ttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggggg                                                                                        <  2:4689813/99‑2 (MQ=255)
              ccGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAgggggtgt                                                                                     <  1:1889080/99‑5 (MQ=255)
                gATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAAtttt                                                                                   <  1:4859540/99‑1 (MQ=255)
                 aTGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAAttttt                                                                                  >  1:2507881/1‑99 (MQ=255)
                  tGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTc                                                                                 <  1:4250064/99‑1 (MQ=255)
                    ccGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGTGAATTTTTCCg                                                                               <  2:680531/99‑1 (MQ=255)
                     cgcgAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCgg                                                                              >  1:4364656/1‑99 (MQ=255)
                          aaTGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAAt                                                                         <  1:959830/99‑1 (MQ=255)
                           aTGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAAtt                                                                        <  1:914540/99‑1 (MQ=255)
                            tGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAAtta                                                                       >  1:3283713/1‑99 (MQ=255)
                                 gaTACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAAttacttac                                                                  >  2:3077784/1‑99 (MQ=255)
                                  aTACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTAcc                                                                 <  1:1071937/99‑1 (MQ=255)
                                   tACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCg                                                                >  1:1545520/1‑99 (MQ=255)
                                   tACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCg                                                                <  2:4271130/99‑1 (MQ=255)
                                      ggggTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCt                                                             >  2:3083572/1‑99 (MQ=255)
                                              cTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCttt                                                     <  1:161064/99‑1 (MQ=255)
                                               tGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtttt                                                    >  1:3423371/1‑99 (MQ=255)
                                               tGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtttt                                                    <  1:1726751/99‑1 (MQ=255)
                                                gTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGCGGGGCATTTTTCCGGCAAATTACTTACCGCCTAAACCttttt                                                   >  2:3866678/1‑99 (MQ=255)
                                                gTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCttttt                                                   <  1:3304549/99‑1 (MQ=255)
                                                 ttGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCtttttt                                                  >  2:4829572/1‑99 (MQ=255)
                                                    cATAACTTCTCCGTGAATCACTGGTCGTTCACACTCTCTATTCAGCATGCAGAGGGGAATTTTTCCGGCAATTTACTTACCGCCTAAACCTTTTTtctc                                               >  2:4950955/1‑99 (MQ=255)
                                                    cATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTtctc                                               >  1:4667583/1‑99 (MQ=255)
                                                    cATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTtctc                                               <  1:4559954/99‑1 (MQ=255)
                                                    cATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTtctc                                               >  1:997630/1‑99 (MQ=255)
                                                     aTAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTcc                                              >  1:5167021/1‑99 (MQ=255)
                                                     aTAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTcc                                              >  1:127830/1‑99 (MQ=255)
                                                       aaCGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAg                                            <  1:135859/99‑1 (MQ=255)
                                                         cGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGtt                                          <  1:2971488/99‑1 (MQ=255)
                                                         cGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCCTTTTTCTCCAGtt                                          <  1:4625152/99‑1 (MQ=255)
                                                          gTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATCTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttc                                         <  1:1711758/99‑1 (MQ=255)
                                                           tctcCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttct                                        <  2:4178638/99‑1 (MQ=255)
                                                            ctcCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGttctt                                       <  1:4965944/99‑1 (MQ=255)
                                                              ccGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTtcttct                                     <  1:738680/99‑1 (MQ=255)
                                                               cGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTcttctt                                    >  1:2354355/1‑99 (MQ=255)
                                                               cGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTcttctt                                    >  1:4045798/1‑99 (MQ=255)
                                                                gTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCTAGTTTTTCttt                                   >  2:1562892/1‑99 (MQ=255)
                                                                gTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCttt                                   >  2:1902371/1‑99 (MQ=255)
                                                                 tGAATCACTAGTCGTTCACACCCCCTCTGCATCATGCAGAGGGTAATTTTTCCGGCAAATTACTTACCGCATAAACCTTTTTTCTCCAGTTCTTCTTTa                                  <  2:1957265/99‑1 (MQ=255)
                                                                   aaTCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTaaa                                <  2:1293964/99‑1 (MQ=255)
                                                                   aaTCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTaaa                                <  1:3991721/99‑1 (MQ=255)
                                                                        cTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGt                           >  1:2715829/1‑99 (MQ=255)
                                                                          ggTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAATTCTTCTTTAAAGTTGTCa                         >  2:4531723/1‑99 (MQ=255)
                                                                           gTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCTCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTCTCAc                        >  2:364235/1‑99 (MQ=255)
                                                                            tCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcg                       >  1:1374508/1‑99 (MQ=255)
                                                                             cGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgc                      <  1:5106947/99‑1 (MQ=255)
                                                                              gTTCACACCCCCTCTGCATCATGCAGAGGGGACTTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgcg                     <  1:773284/99‑1 (MQ=255)
                                                                              gTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgcg                     >  2:215183/1‑99 (MQ=255)
                                                                              gTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCAcgcg                     >  1:2235233/1‑99 (MQ=255)
                                                                               ttCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGt                    >  2:1916887/1‑99 (MQ=255)
                                                                               ttCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGt                    <  2:2162465/99‑1 (MQ=255)
                                                                                 cacaCCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGa                  >  2:1547584/1‑99 (MQ=255)
                                                                                  acacCCCCTCTGCCTCATGCAGAGGGGAATTTTTCCGGCCAATTACTCACCCCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTCTCACGCGTGAt                 >  2:3247247/1‑99 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 <  2:446704/99‑1 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 <  1:1811120/99‑1 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 >  2:783624/1‑99 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 >  2:817962/1‑99 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 >  2:2958972/1‑99 (MQ=255)
                                                                                  acacCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGAt                 >  2:29193/1‑99 (MQ=255)
                                                                                    acCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCa               <  1:3200296/99‑1 (MQ=255)
                                                                                     tccccTCTGCATGATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAg              >  1:1255133/2‑99 (MQ=255)
                                                                                     tccccTCTGCATGATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAg              >  1:4022014/2‑99 (MQ=255)
                                                                                      ccccTCTGCATGATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGt             >  2:1284460/1‑99 (MQ=255)
                                                                                       cccTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTa            >  1:3971703/1‑99 (MQ=255)
                                                                                       cccTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGACACGCGTGATAAGTa            >  1:1280497/1‑99 (MQ=255)
                                                                                        ccgctGCAGCATGCGGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTGTCTCCAGTTCCCCTTTAAGGTTGTCACGCGTGTTCAGTAc           <  2:2749238/96‑1 (MQ=255)
                                                                                        ccTCTGCATGATGCAGAGGGGAAATTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAc           >  2:718752/1‑99 (MQ=255)
                                                                                        ccTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAc           >  1:2929034/1‑99 (MQ=255)
                                                                                         ctctGCATGATGCAGAAGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAcc          <  1:2205645/99‑1 (MQ=255)
                                                                                         ctctGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAcc          >  1:2822809/1‑99 (MQ=255)
                                                                                         ctctGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAcc          >  1:4957761/1‑99 (MQ=255)
                                                                                           ctGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCAc        >  1:2112723/1‑99 (MQ=255)
                                                                                            tGCATGAAGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACg       >  2:4863324/1‑99 (MQ=255)
                                                                                            tGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACg       >  1:688178/1‑99 (MQ=255)
                                                                                                tcatGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCgg   <  1:3009639/99‑1 (MQ=255)
                                                                                                tcatGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCgg   >  2:2376406/1‑99 (MQ=255)
                                                                                                tcatGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCgg   >  1:1012859/1‑99 (MQ=255)
                                                                                                 |                                                                                                  
CGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGT  >  NC_000913/1985015‑1985210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑