Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,971,1590GA23.4% 417.3 / 113.7 224intergenic (+26/‑112)ygdQ/ygdRUPF0053 family inner membrane protein/DUF903 family verified lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (102/68);  new base A (21/31);  total (123/101)
Fisher's exact test for biased strand distribution p-value = 1.65e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 235 total aligned reads displayed.

CTACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCATAGGTAGGCCAAA  >  NC_000913/2971061‑2971257
                                                                                                  |                                                                                                  
cTACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAgg                                                                                                    >  2:4179399/1‑99 (MQ=255)
cTACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAgg                                                                                                    <  1:2645470/99‑1 (MQ=255)
 tACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAggg                                                                                                   >  1:1572872/1‑99 (MQ=255)
 tACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAggg                                                                                                   <  2:3296599/99‑1 (MQ=255)
 tACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAggg                                                                                                   <  2:3227243/99‑1 (MQ=255)
  aCTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGc                                                                                                  <  2:4986612/99‑1 (MQ=255)
    ttCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGt                                                                                                >  2:1827014/1‑99 (MQ=255)
     tggcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTa                                                                                               <  2:2749862/97‑1 (MQ=38)
     tCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTa                                                                                               <  1:4003494/99‑1 (MQ=38)
     tCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTa                                                                                               <  2:2107710/99‑1 (MQ=38)
     tCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTa                                                                                               <  2:2513182/99‑1 (MQ=39)
     tCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTa                                                                                               <  2:3079535/99‑1 (MQ=38)
      cgcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTac                                                                                              <  1:3132834/99‑1 (MQ=255)
      cgcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTac                                                                                              <  1:2931165/99‑1 (MQ=255)
      cgcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTac                                                                                              <  1:3924103/99‑1 (MQ=38)
      cgcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTac                                                                                              <  2:3805586/99‑1 (MQ=39)
      cgcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTac                                                                                              <  1:1219763/99‑1 (MQ=38)
       gcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTact                                                                                             <  1:1959751/99‑1 (MQ=255)
       gcgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTact                                                                                             >  2:1344137/1‑99 (MQ=255)
       gcgATGTTCTTCGCTATTGCGGTCGGAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTacg                                                                                             <  2:3413723/99‑2 (MQ=37)
        cgATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCCCTCCCGCAGGAGAGCGTacgg                                                                                            <  1:793861/99‑3 (MQ=38)
         gATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTactca                                                                                           >  1:1804067/1‑99 (MQ=255)
         gATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTactca                                                                                           >  2:897692/1‑99 (MQ=255)
         gATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCAGTACGCCCTCCCGCAGGAGAGCGTacgga                                                                                           <  2:4358463/99‑4 (MQ=37)
             ttcttcTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTcc                                                                                       >  1:1771904/1‑99 (MQ=255)
                ttctCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCttt                                                                                    >  1:3231078/1‑99 (MQ=255)
                ttctCTATTGCGGCTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCTGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCttt                                                                                    <  1:4671796/99‑1 (MQ=255)
                 tctcTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCtttt                                                                                   <  1:1063198/99‑1 (MQ=255)
                  ctctATTGCGGTTGAAAGCCGCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTGTTa                                                                                  >  2:2361480/1‑99 (MQ=255)
                   tctATTGCGGTTGAAAGCCTCAACTAGATTCGCAACAAAAAGAATCGGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTAGTCACTCCGTTTaa                                                                                 >  2:4730529/1‑98 (MQ=255)
                           ggTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAg                                                                         >  1:1170080/1‑99 (MQ=255)
                               gAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTa                                                                     <  1:2056720/99‑1 (MQ=255)
                                aaaGCCTGAACTTGGTTCGCAACAAAAAGAATCCGCTGTGATACTCTGTTCGTTCTCCTGCGGGAGGGCCTACGCTCCCCTTTCACCATCCCAGTTTaa                                                                    <  2:1166441/99‑1 (MQ=255)
                                 aaGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGTGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAg                                                                   >  2:290840/1‑99 (MQ=255)
                                    ccTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACACTCACAGTTCAAGAtg                                                                >  1:4259303/1‑98 (MQ=255)
                                     cTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGAttt                                                               >  2:2747498/1‑99 (MQ=255)
                                      tCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGAtttt                                                              >  2:1938615/1‑99 (MQ=255)
                                         aCTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCt                                                           <  2:4151885/99‑1 (MQ=255)
                                         aCTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCt                                                           <  1:303825/99‑1 (MQ=255)
                                         aCTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCt                                                           <  2:4815821/99‑1 (MQ=255)
                                          cTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTAGGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTGCTCTCACAGTTTAAGATTTTCCTg                                                          >  2:1847336/1‑99 (MQ=255)
                                            tGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCt                                                        <  1:3013730/99‑1 (MQ=255)
                                               ttCGCAACAAAAAGAATCCGCGCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTc                                                     <  1:4833411/99‑1 (MQ=255)
                                                tcccaacaaAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGTGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCa                                                    <  1:2028020/96‑1 (MQ=255)
                                                tCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCa                                                    >  2:448335/1‑99 (MQ=255)
                                                 cGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCaa                                                   <  1:1475379/99‑1 (MQ=255)
                                                 cGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCaa                                                   <  2:611617/99‑1 (MQ=255)
                                                 cGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCaa                                                   >  2:2849562/1‑99 (MQ=255)
                                                  gCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAg                                                  >  2:3107584/1‑99 (MQ=255)
                                                  gCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAg                                                  >  1:2294521/1‑99 (MQ=255)
                                                  gCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATCTTCCTGCTTTCAAg                                                  >  1:1628770/1‑99 (MQ=255)
                                                    aacaaAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGat                                                >  1:734976/1‑99 (MQ=255)
                                                     acaaAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGata                                               >  2:761983/1‑99 (MQ=255)
                                                      caaAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGatat                                              >  1:4580064/1‑99 (MQ=255)
                                                         aaaGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGAGTTTCCTGCTTTCAAGAtatata                                           >  1:3465483/1‑99 (MQ=255)
                                                          aaGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATaa                                          >  2:1212974/1‑99 (MQ=255)
                                                            gAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACg                                        >  1:2488877/1‑99 (MQ=255)
                                                               tCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCg                                     <  2:1989052/99‑1 (MQ=255)
                                                                 cGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGt                                   <  2:658035/99‑1 (MQ=255)
                                                                  gCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTCAGATCTTCCTGCTTTCACGATCTCTAACGTCCGtc                                  >  2:1106427/1‑98 (MQ=255)
                                                                   ctctGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTCCCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGttt                                 <  2:1066887/99‑1 (MQ=255)
                                                                   ctctGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGttt                                 <  1:655208/99‑1 (MQ=255)
                                                                   ctctGATACTCCGTACGCACTCCTGCGGGCGGGCGAGCTCACTCCTTATACCCTCACAGTTTAAGGTCTTCCAGCGTTCAAGATATATAACGTCGGttt                                 >  2:2555777/1‑99 (MQ=255)
                                                                    tctGATACTCCGTACGCCCTCATGCGGGAGGGCGTACTCACTCCTTTTACCATCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTta                                >  2:3942539/1‑99 (MQ=255)
                                                                     ctGATACTGCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCTTAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtat                               <  2:3692796/99‑1 (MQ=255)
                                                                     ctGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtat                               <  2:3137924/99‑1 (MQ=255)
                                                                     ctGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtat                               <  2:4019010/99‑1 (MQ=255)
                                                                     ctGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtat                               <  1:3292883/99‑1 (MQ=255)
                                                                      tGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTCCCCCCACAGTTTAAGATTTTCCTCCTGTCAAGATATATAACGTGGGTTtata                              >  2:3459664/1‑99 (MQ=255)
                                                                      tGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtata                              <  2:4091371/99‑1 (MQ=255)
                                                                      tGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtata                              >  1:4727946/1‑99 (MQ=255)
                                                                      tGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTtata                              >  2:3480992/1‑99 (MQ=255)
                                                                         tACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAAc                           <  1:4741725/99‑1 (MQ=255)
                                                                          aCTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACa                          >  1:4372617/1‑99 (MQ=255)
                                                                           gtgagTACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAg                         >  2:623801/5‑99 (MQ=37)
                                                                           gtgagTACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAg                         >  1:1864925/5‑99 (MQ=38)
                                                                            tgagTACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGa                        >  1:184449/4‑99 (MQ=37)
                                                                            tCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGa                        >  2:2422361/1‑99 (MQ=255)
                                                                            tCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTGAAGATTTTCCTGCTCTCAAGATATATAACGTCGGTTTATAAACAGa                        >  2:1020560/1‑99 (MQ=255)
                                                                             gagTACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGAc                       >  1:2971887/3‑99 (MQ=38)
                                                                             ccGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGAc                       <  2:1085671/99‑1 (MQ=255)
                                                                               gTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACTCTCACATTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACta                     >  2:1450032/1‑99 (MQ=255)
                                                                                tACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtat                    >  1:3774641/1‑99 (MQ=255)
                                                                                tACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtat                    >  1:154349/1‑99 (MQ=39)
                                                                                tACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtat                    >  1:1356163/1‑99 (MQ=39)
                                                                                tACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtat                    >  2:1566168/1‑99 (MQ=39)
                                                                                tACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtat                    >  1:3638429/1‑99 (MQ=38)
                                                                                tACGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTCAAGCTTTTCCTGCTGACAAGATATCTACTCTCGGTATCTAAACAAACtat                    >  2:4273952/1‑99 (MQ=16)
                                                                                  cGCCCTCCCGCAGGAGAGCGTACTCACTCCTTTTACCCTCACAGTTTACGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtatta                  >  1:194033/1‑99 (MQ=255)
                                                                                   gCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACtattat                 >  1:4097555/1‑99 (MQ=255)
                                                                                     tctcCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCa               >  1:1694159/1‑99 (MQ=255)
                                                                                     tctcCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCa               >  1:2714039/1‑99 (MQ=255)
                                                                                     tctcCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCa               >  2:1802884/1‑99 (MQ=255)
                                                                                         cTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCAtagg           >  2:384585/1‑99 (MQ=255)
                                                                                         cTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCAtagg           <  2:4420257/99‑1 (MQ=255)
                                                                                         cTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGGCTGTTTATAAACAGACTATTATCAtgga           >  1:5194905/1‑96 (MQ=255)
                                                                                           gCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCAtaggta         <  2:2934622/99‑1 (MQ=255)
                                                                                           gCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCAtaggta         >  1:574157/1‑99 (MQ=255)
                                                                                            cGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCAtaggtag        <  1:3726160/99‑1 (MQ=255)
                                                                                                  ggCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCATTGGTAGGCCaaa  <  1:4470636/99‑1 (MQ=255)
                                                                                                  |                                                                                                  
CTACTTCGCGATGTTCTTCTCTATTGCGGTTGAAAGCCTCAACTTGATTCGCAACAAAAAGAATCCGCTCTGATACTCCGTACGCTCTCCTGCGGGAGGGCGTACTCACTCCTTTTACCCTCACAGTTTAAGATTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCATAGGTAGGCCAAA  >  NC_000913/2971061‑2971257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑