New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 20668320 (0.000)52 (0.380) 16/178 13.8 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 426 total aligned reads displayed.

CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2066726‑2066832
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggtcgaTGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  NC_000913/2066857‑2066760
                                                                                                                                                                                                             
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTC                                                                                                            <  2:1919423/99‑1
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTC                                                                                                            <  2:1105487/99‑1
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTC                                                                                                            <  2:2821781/99‑1
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTC                                                                                                            >  2:1651034/1‑99
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTC                                                                                                            >  1:556822/1‑99
 TCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCT                                                                                                           >  1:3239032/1‑99
 TCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCT                                                                                                           <  1:3837359/99‑1
 TCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCT                                                                                                           <  1:1497114/99‑1
 TCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCT                                                                                                           <  1:2762058/99‑1
 TCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGCCTGATGCCTCTCCGGCTCGCGTTGCTGCTCTTCGTTCT                                                                                                           >  2:2418894/1‑99
 TCTTGGCATCGACACCAATGTGGGCCGTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGCTCT                                                                                                           >  2:889765/1‑99
  CTTGGCATCGACTCCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTT                                                                                                          <  1:2867065/99‑1
  CTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTT                                                                                                          <  2:3274248/99‑1
  CTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTT                                                                                                          <  1:2913198/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTTATTGCCTTTCTTGGTCTGATGCATCTCCGAATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  2:474452/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTGTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  2:1320635/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:3136075/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:3880904/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:3944170/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:3327337/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:3424636/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:2151920/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         >  1:2258742/1‑99
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  2:2840288/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  1:1878645/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         >  2:3146598/1‑99
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         <  2:3751840/99‑1
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTG                                                                                                         >  1:996211/1‑99
   TTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTATTG                                                                                                         >  2:267705/1‑99
    TGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGTATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGG                                                                                                        <  2:2201048/99‑1
    TGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGG                                                                                                        <  1:2432347/99‑1
    TGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGG                                                                                                        <  1:2024183/99‑1
      GCATCGACACCAATGTGGGCCTTCATGTCAAAGTTCCACTGATTGACTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      <  1:3067041/99‑1
      GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      <  2:404369/99‑1
      GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      >  1:1592595/1‑99
      GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      <  2:3816980/99‑1
      GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      >  1:1185822/1‑99
      GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTCGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTC                                                                                                      <  2:1285537/99‑1
       CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCG                                                                                                     >  1:368676/1‑99
       CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCG                                                                                                     >  2:552438/1‑99
       CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCG                                                                                                     <  1:1008683/99‑1
       CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCG                                                                                                     >  2:730373/1‑99
       CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCG                                                                                                     <  1:653239/99‑1
        ATCGACACCAATGTGGGCCTTCATGCCACAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATTTCCGGATGGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  2:350819/1‑99
        ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCCTCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  2:604452/1‑99
        ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    <  1:153713/99‑1
        ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  1:802969/1‑99
        ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  1:3592441/1‑99
        ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  2:1969714/1‑99
        ATCGACACCAATGTGGGCCTTCATGCCAAAGAGCCACTGATGGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA                                                                                                    >  2:1573107/1‑99
         aCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATATCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTCGGTGCTCTTTGTTCTTTGTCaag                                                                                                   >  2:2376986/2‑96
                                  CAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCT                                                                          <  1:1954418/99‑1
                                        GCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCA                                                                    <  2:2128514/99‑1
                                        GCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCA                                                                    <  1:1134177/99‑1
                                         CCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGTTCGCGTGGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAA                                                                   <  1:2375584/99‑1
                                         CCACTGATTGCCTCTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAA                                                                   <  1:2714296/99‑1
                                          CACTGATTGCCTGTCTTGGTCTGATGAATATCCGGATCGCGTTGCTGCTCTTTGTTCTCGGTCGATGCTACCATCATTGAGGCACCCAGCTCGACCAAG                                                                  <  2:3657084/99‑1
                                           ACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGA                                                                 <  2:124493/99‑1
                                           ACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGA                                                                 <  1:1404604/99‑1
                                           ACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGA                                                                 <  1:1765299/99‑1
                                            CTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAA                                                                <  1:172150/99‑1
                                            CTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAA                                                                <  1:2122634/99‑1
                                            CTGATTGCCGTTCTTGGTCTCATGCATGTGCGGATGGCGTTGGTGCTCCTTGTTGTTGGTCGATGCCACCATCATTGAGGCACCCAGCGCGACCAAGAA                                                                <  2:3302939/99‑1
                                                 TGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAG                                                           <  1:510489/99‑1
                                                 TGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTCCGTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAG                                                           <  1:107907/99‑1
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          <  1:440365/99‑1
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          <  1:3512314/99‑1
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          >  1:1244913/1‑99
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          <  1:618414/99‑1
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          >  1:2543535/1‑99
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCAGGAGAAGAATCAGACCAAGAAAGGCAATCAGTG          >  1:2595392/1‑99
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCGCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTG          <  1:399491/99‑1
                                                                                                  CTTGGTCGATGCCACCATCATTGAGGCACCCAGCCCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAAACAGTG          >  2:2010124/1‑99
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACTAAGAGCCGCAACGCGATCCGGAGATGCGTCAGACCAAGATAGGCAATCAGTGG         <  2:3593732/99‑1
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGTAGATGCATCAGACCAAGAAAGGCAATCAGTGG         <  2:24666/99‑1
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGG         <  2:2501730/99‑1
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGG         >  2:803012/1‑99
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGG         >  1:1848650/1‑99
                                                                                                   TTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGG         >  1:865550/1‑99
                                                                                                     GGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCA       <  2:2571114/99‑1
                                                                                                      GTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGCTCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCAC      >  2:2797990/1‑99
                                                                                                      GTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCAC      >  2:271575/1‑99
                                                                                                      GTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCAC      >  1:3170788/1‑99
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGCGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     >  2:2895650/1‑99
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     >  2:1181964/1‑99
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     >  1:1418820/1‑99
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     <  1:2176685/99‑1
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     >  2:2048404/1‑99
                                                                                                       TCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACT     >  2:1765342/1‑99
                                                                                                        CGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTT    <  2:2293112/99‑1
                                                                                                         GATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTT   <  1:1068579/99‑1
                                                                                                         GATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTT   <  2:3050568/99‑1
                                                                                                         GATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTT   <  2:2252789/99‑1
                                                                                                         GATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTT   >  1:1445596/1‑99
                                                                                                          ATGCCACCATCATTGAGGCGCCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  2:3430321/99‑1
                                                                                                          ATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAGAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  2:3158993/99‑1
                                                                                                          ATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  2:2969639/99‑1
                                                                                                          ATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  1:771822/99‑1
                                                                                                          ATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  1:714644/99‑1
                                                                                                          ATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  1:2680046/99‑1
                                                                                                                                                                                                             
CTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2066726‑2066832
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggtcgaTGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTG  <  NC_000913/2066857‑2066760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.