Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,142,5050GC20.8% 380.3 / 98.2 168R148R (CGC→CGG) udkuridine/cytidine kinase
Reads supporting (aligned to +/- strand):  ref base G (64/69);  new base C (10/25);  total (74/94)
Fisher's exact test for biased strand distribution p-value = 5.48e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 178 total aligned reads displayed.

TCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCGAGAAT  >  NC_000913/2142407‑2142603
                                                                                                  |                                                                                                  
 cAATGTATTGCAGCAACTTCGGGCGCCCGGTTTCTTCATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATgcggc                                                                                                   <  1:2632261/99‑1 (MQ=255)
 cAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATgcggc                                                                                                   <  1:1158490/99‑1 (MQ=255)
  aaTGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATgcggcg                                                                                                  >  1:3191751/1‑99 (MQ=255)
  aaTGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATgcggcg                                                                                                  >  2:1126882/1‑99 (MQ=255)
    tGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCa                                                                                                >  1:3529845/1‑99 (MQ=255)
       aTTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCa                                                                                             >  2:682698/1‑99 (MQ=255)
        ttGCAGGAAGATCGGGCGCACGGTTGTTTGATAGGGCGCCATCGCTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCaa                                                                                            <  2:2197449/99‑2 (MQ=255)
        ttGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCCCTGAATCCACTGAACGCCCACGCCCGTTAACGTCACGCTTGATGCGGCGCATCAg                                                                                            >  2:2418657/1‑99 (MQ=255)
        ttGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCaa                                                                                            <  1:1113322/99‑2 (MQ=255)
         tGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAgg                                                                                           <  1:617605/99‑1 (MQ=255)
         agCAGGATCATCGAGCGCAGGGTCATTTCCTAGTGCGCCACCAATGACACCATTGAACGCCCACGCGAGTGAACGACAAGCTTGATGCGCCgcagcaat                                                                                           <  2:1983664/98‑3 (MQ=255)
          gCAGGTACACCGGGCGCACGGTATTTTGTTATTGCGCCATCACTCACTCCATTGCACGCCCACGCTCGTTAACGTCACCCCAGATGCGCCGCCTCAAGc                                                                                          <  2:419920/99‑1 (MQ=255)
          gCAGGAGCTTCGGGCGCCCGGTTTTTTGATATTGCGCCATCACTGAATCCATTGGACGGCCACGCTTGTTAACGTCTCGCTTGATGCGCCGCTTCAAGc                                                                                          <  2:1046842/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGc                                                                                          <  1:162562/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  1:2798429/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  1:48237/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  1:140533/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  2:663966/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCCTGATGCGCCGCATCAAGc                                                                                          <  2:1132878/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCGCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  2:2805810/99‑1 (MQ=255)
          gCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTAAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGc                                                                                          <  2:3309505/99‑1 (MQ=255)
           cAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCa                                                                                         >  1:980/1‑99 (MQ=255)
           cAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGCCGCATCAAGcg                                                                                         <  1:1532126/99‑2 (MQ=255)
            aGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAg                                                                                        <  1:1858798/99‑1 (MQ=255)
              gAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGat                                                                                      >  1:3383819/1‑99 (MQ=255)
               aaCATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGata                                                                                     >  1:3912658/1‑99 (MQ=255)
                    cGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAg                                                                                <  1:2887103/99‑1 (MQ=255)
                       gcgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCgg                                                                             <  2:2081392/99‑1 (MQ=255)
                       gcgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCCTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCgg                                                                             >  1:1094591/1‑99 (MQ=255)
                        cgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCggg                                                                            <  1:2544019/99‑1 (MQ=255)
                        cgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCggg                                                                            <  1:2738327/99‑1 (MQ=255)
                        cgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCggg                                                                            <  1:931650/99‑1 (MQ=255)
                        cgcACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCggg                                                                            <  1:1035932/99‑1 (MQ=255)
                        cgcACGGTTTTTTGATATTGCGCCATCACTGAAGCGATTGAACGCCCACGCTCGGTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCggg                                                                            <  1:1035955/99‑1 (MQ=255)
                           aCGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTa                                                                         >  2:265029/1‑99 (MQ=255)
                           aCGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTa                                                                         >  1:1749961/1‑99 (MQ=255)
                            cGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTAt                                                                        <  1:1740086/99‑1 (MQ=255)
                             ggTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATc                                                                       >  1:779615/1‑99 (MQ=255)
                               ttttttGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCaa                                                                     <  2:516588/99‑1 (MQ=255)
                               ttttttGATATTGCGCCATCACTGAAGCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATGAGGCAGATATCCAGCGGGGTATCaa                                                                     <  1:3673020/99‑1 (MQ=255)
                                    tGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGGCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGaaa                                                                <  2:1846881/99‑1 (MQ=255)
                                         ttGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGga                                                           <  1:2342606/99‑1 (MQ=255)
                                         ttGCGCCATCACTGAATCCATTGAACGCCCACGCTCGGTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGga                                                           >  1:2937026/1‑99 (MQ=255)
                                          tGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGgag                                                          <  2:1890045/99‑1 (MQ=255)
                                            cgcCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaa                                                        <  2:3533189/99‑1 (MQ=255)
                                            cgcCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaa                                                        <  1:1521118/99‑1 (MQ=255)
                                               cATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagtt                                                     >  2:790831/1‑99 (MQ=255)
                                                aTCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCACCGAAAATGGAGaagtta                                                    >  2:2093204/1‑99 (MQ=255)
                                                aTCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagtta                                                    >  2:922917/1‑99 (MQ=255)
                                                aTCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagtta                                                    >  1:1041824/1‑99 (MQ=255)
                                                 tCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagttaa                                                   <  1:2238236/99‑1 (MQ=255)
                                                    cTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagttaagtt                                                >  1:1696749/1‑99 (MQ=255)
                                                    cTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagttaagtt                                                >  1:3024548/1‑99 (MQ=255)
                                                    cTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGaagttaagtt                                                >  1:3456928/1‑99 (MQ=255)
                                                     tGAATCAATTCAAAGCCAACGCTCGTTAACGTAACGCTTGATGTGGCGCATCAGGCAGATATCCAGCGGGGTATAAACGAAAATGGCGAAGTTACGTTc                                               <  2:2718550/99‑1 (MQ=255)
                                                          ccATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCAc                                          <  1:2077347/99‑1 (MQ=255)
                                                          ccATTGAAAGCCCACGCGCGTTAACGTCACGGTTGATGCGGCGCATCAGGCAGATATCCCGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCAc                                          <  2:3091756/99‑1 (MQ=255)
                                                            aTTGAACGCCCAAGCTCGTTAACGTCACGCTTGATGCGGCACATCAGGCAGACATCCAGCGGCGCCTCAACGAAAAAGAAGACGTAAAGTCCGTCACGc                                        >  2:3644850/1‑99 (MQ=255)
                                                             ttGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCa                                       >  1:2099282/1‑99 (MQ=255)
                                                               gAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCaaa                                     <  1:544277/99‑1 (MQ=255)
                                                               gAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCaaa                                     <  2:3619312/99‑1 (MQ=255)
                                                               gAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCaaa                                     <  1:1057849/99‑1 (MQ=255)
                                                                aaCGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAc                                    >  2:2810024/1‑99 (MQ=255)
                                                                aaCGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAc                                    >  1:426109/1‑99 (MQ=255)
                                                                  cGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAcgc                                  <  1:2186203/99‑1 (MQ=255)
                                                                  cGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAcgc                                  <  1:2859659/99‑1 (MQ=255)
                                                                  cGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAcgc                                  <  1:2784693/99‑1 (MQ=255)
                                                                  cGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAcgc                                  >  1:3811467/1‑99 (MQ=255)
                                                                   gCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAAcgcg                                 >  2:2281023/1‑99 (MQ=255)
                                                                    cccACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCTGCTGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACgcgc                                <  2:1420180/99‑1 (MQ=255)
                                                                    cccACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACgcgc                                <  1:2367592/99‑1 (MQ=255)
                                                                    cccACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACgcgc                                >  2:124865/1‑99 (MQ=255)
                                                                      cACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCAt                              >  1:791903/1‑99 (MQ=255)
                                                                       aCGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATc                             >  2:595546/1‑99 (MQ=255)
                                                                        cGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATcc                            <  1:1489311/99‑1 (MQ=255)
                                                                         gCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCg                           >  1:2891104/1‑99 (MQ=255)
                                                                          cTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGt                          <  2:3399025/99‑1 (MQ=255)
                                                                           tCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTc                         >  2:1741356/1‑99 (MQ=255)
                                                                           tCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAATTCGTCACGCAAACGCGCATCCGTc                         <  2:1738238/99‑1 (MQ=255)
                                                                             gTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAg                       >  2:461527/1‑99 (MQ=255)
                                                                               tAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGca                     >  1:831929/1‑99 (MQ=255)
                                                                                aaCGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGcaa                    >  1:2870131/1‑99 (MQ=255)
                                                                                  cctCACGCTTGATGCGGCGCAACAGGCAGATATCCCGCTGGGTCGCAAAGGAAATCGCGATGTTAAGTTCGTCACGCAAACGCGCATCCGTCTGcgaca                  >  2:1950935/3‑99 (MQ=255)
                                                                                     cACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACaaaa               <  2:3835237/99‑1 (MQ=255)
                                                                                      aCGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAAt              >  2:2452841/1‑99 (MQ=255)
                                                                                      aCGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAAt              >  1:698686/1‑99 (MQ=255)
                                                                                       tgcctGATGCGCCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATg             >  1:3794131/5‑99 (MQ=255)
                                                                                        gcctGATGCGCCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGATCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGc            >  2:3494643/4‑99 (MQ=255)
                                                                                         cTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGcc           >  1:3829318/1‑99 (MQ=255)
                                                                                          ctGATGCGCCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCt          >  1:1944356/2‑99 (MQ=255)
                                                                                            gATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGACAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTc        >  1:3008650/1‑99 (MQ=255)
                                                                                            gATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTc        <  2:3282855/99‑1 (MQ=255)
                                                                                            gATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTc        <  1:303159/99‑1 (MQ=255)
                                                                                              tGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCTGTCAGCAACAAAATGCCTTCga      >  1:248433/1‑99 (MQ=255)
                                                                                              tGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCga      >  1:2384673/1‑99 (MQ=255)
                                                                                              tGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCga      <  2:680295/99‑1 (MQ=255)
                                                                                              tGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCga      <  2:1301736/99‑1 (MQ=255)
                                                                                              tGCGCCGCATCAGGCAGATATCCAGCGGCGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCga      <  1:3603668/99‑1 (MQ=255)
                                                                                                  gcgcATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCGAGAat  >  1:1594178/1‑99 (MQ=255)
                                                                                                  gcgcATCAGGCAGATATCCAGCGGGGCATCAACTAATATGAAGAAGTTAAGTTCGTCACGCAAACGGTCATTCGTCAGCAACAAAATGCCTTCTAGAat  <  2:1026612/99‑1 (MQ=255)
                                                                                                  |                                                                                                  
TCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGCCATCACTGAATCCATTGAACGCCCACGCTCGTTAACGTCACGCTTGATGCGGCGCATCAGGCAGATATCCAGCGGGGTATCAACGAAAATGGAGAAGTTAAGTTCGTCACGCAAACGCGCATCCGTCAGCAACAAAATGCCTTCGAGAAT  >  NC_000913/2142407‑2142603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑