| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,946,246 | 0 | G | A | 25.0% | 277.4 / 90.4 | 160 | noncoding (2543/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| Reads supporting (aligned to +/- strand): ref base G (64/56); new base A (12/28); total (76/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.12e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 168 total aligned reads displayed.
GGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGT > NC_000913/3946148‑3946325 | gggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAg < 1:2090205/99‑1 (MQ=34) ggATAAGAGGCTGTTACCGCCCAAGAGTTCATATCGGCGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAgg < 2:2998921/99‑1 (MQ=255) ggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAgg < 1:3858073/99‑1 (MQ=34) ggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAgg < 1:1462011/99‑1 (MQ=34) agATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAgg < 2:933525/98‑1 (MQ=18) cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg < 1:472386/99‑1 (MQ=33) cAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATgg < 2:404719/99‑1 (MQ=18) aGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGc > 2:2608689/1‑99 (MQ=33) aGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGc > 2:2898025/1‑99 (MQ=33) ggCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCt < 2:1870500/99‑1 (MQ=21) gCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTg > 1:3213037/1‑99 (MQ=33) gCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTAGGCTCATCACATCCTGGAGCGGCAGTAGGTCCCAAGGGTATGGCTg > 2:2141995/1‑99 (MQ=255) tGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGtt < 1:780711/99‑1 (MQ=34) gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTc > 1:882373/1‑99 (MQ=33) gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTc > 2:884554/1‑99 (MQ=33) gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTc < 2:1576199/99‑1 (MQ=34) aTACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg > 1:1256413/1‑99 (MQ=33) tACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGc < 2:1489470/99‑1 (MQ=21) ccGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCa < 2:1528955/99‑1 (MQ=34) cGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTTGCCAt > 1:1372076/1‑99 (MQ=18) cGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAt > 1:1133450/1‑99 (MQ=34) cccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAttt < 1:1101008/99‑1 (MQ=33) cccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAACTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAttt > 1:1039976/1‑99 (MQ=21) ccaaaGAGTTAATATCGACGGCGGTGTTTGGGACCTCGATGTCGGCTCATCACATCCGGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCAttt < 2:2952832/96‑1 (MQ=11) ccAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTa > 2:1423462/1‑99 (MQ=34) gtgagTTGATATGGACGGCGGTGTTTGGCACCTCGTTGTCGGCTCATCACGTCCTGGAGCTGCAGCAGGTCGCAAAGGTATGGCTGTTCGCCATTTaaa < 2:543729/97‑1 (MQ=11) aaGAGTTCATATCTACGGCGGTGTTTGGCACATCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTaaa < 2:3013763/99‑1 (MQ=11) aaGAGTTCATATCGACGGCTGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTaaa < 2:982835/99‑1 (MQ=16) aaGAGTTCATATCGACGGCGGTGTTTGGCACTTCGATGTCGTCTCATCACATCCTGGAGCTGAAGTATGTCCCAAAGGTATGGCNGTTCGCCATTTaaa < 2:564666/99‑1 (MQ=11) aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTATGTCCCAAAGGTATGGCTGTTCGCCATTTaaa < 2:3460409/99‑1 (MQ=255) aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTaaa > 2:818824/1‑99 (MQ=33) aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTaaa < 2:3815598/99‑1 (MQ=21) aaGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCACCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTaaa < 2:3545462/99‑1 (MQ=255) agagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAg > 1:1229409/1‑99 (MQ=33) gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGt > 1:637814/1‑99 (MQ=33) gagTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGt < 1:1180867/99‑1 (MQ=18) agTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTg < 2:2802054/99‑1 (MQ=34) agTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTg < 2:2750778/99‑1 (MQ=34) ttCATATGGACTGGGGTGTTTGGAACCACTATGGCGGCTGATCGCCGCCTGGAGCTGAAGTAGGTTGCATGGTTATGGGTGTTGGGCATTTAAAGTGGt > 2:1590580/1‑99 (MQ=255) cATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGAGGTAc < 2:3238717/99‑1 (MQ=255) atatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAcg > 2:3276248/1‑99 (MQ=33) tatCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTAcgc > 1:2404386/1‑99 (MQ=33) tCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGa < 2:2396060/99‑1 (MQ=34) gACGGCGGTGTATGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGc > 1:3411348/1‑99 (MQ=18) aCGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCt > 1:3548682/1‑99 (MQ=18) cggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTg < 1:3133856/99‑1 (MQ=34) ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg > 2:2491476/1‑99 (MQ=34) ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg < 2:1700158/99‑1 (MQ=34) ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg > 1:1039596/1‑99 (MQ=21) ggcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg > 1:2518706/1‑99 (MQ=21) gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGCGCTggg > 1:1276572/1‑99 (MQ=16) gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg > 1:362013/1‑99 (MQ=18) gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg > 1:78625/1‑99 (MQ=18) gcggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTACGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTggg > 1:19987/1‑99 (MQ=255) cggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGt < 1:2628855/99‑1 (MQ=34) ggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGtt < 1:2253614/99‑1 (MQ=34) ggTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGtt < 2:1856334/99‑1 (MQ=18) ggTGTTTGCCACCTCGATGTCAACACAACCCATCCTGGAGCTGAAGTAGGTCCCCAGTGTATGGCTGTTCGCACTTTTATGGCGTACGCCAGCTTGGtt > 2:3398734/1‑99 (MQ=2) gtTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAg > 1:2394447/1‑99 (MQ=34) tttGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGa > 1:197811/1‑99 (MQ=34) ggCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGGACGCGAGCTGGGTTTAGAAcg > 1:3004790/1‑99 (MQ=21) gCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgt > 2:2321215/1‑99 (MQ=33) cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtc < 1:3515887/99‑1 (MQ=34) cACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtc < 2:285403/99‑1 (MQ=18) cACCTCGATGTCGGCGCATCACATCCTGGAGCTGAAGTAGGCCTCAAAGGTATGGCTGTTCGCCATTTATAGTGGTACGCGAGCTGGGTTTAGAAcgtc < 2:1621708/99‑1 (MQ=11) aCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTCTGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg > 1:504188/1‑99 (MQ=18) aCCTCGACGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg > 2:3680978/1‑99 (MQ=18) ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcgt > 2:2603776/1‑99 (MQ=33) ccTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcgt < 1:3949282/99‑1 (MQ=34) ccTCCATGTCGGCTCAGCACAGCCGGGAGCTGAAGGAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcatcgt < 1:3551927/99‑1 (MQ=11) cTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg < 1:2926047/99‑1 (MQ=34) cTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg < 1:1734952/99‑1 (MQ=34) tCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga < 2:1374218/99‑1 (MQ=33) tCGATGTCGGCTCATCACACCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga < 1:1140897/99‑1 (MQ=18) gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgaga > 2:2928792/1‑99 (MQ=34) gATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgaga < 1:1495680/99‑1 (MQ=34) aTGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAc < 2:450834/99‑1 (MQ=18) tGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACa < 2:550475/99‑1 (MQ=34) tGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACa > 2:1387115/1‑99 (MQ=33) gTCGGCTCCTCACATCCTGGAGCCGAACTACGTCCCAAGTGTATGGCTCTTCGCCCTTTAACATGGTACGCGCCGCGCGTTTACAACGTCATGAcacac > 2:3638214/1‑98 (MQ=255) tCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt > 1:2665992/1‑99 (MQ=21) ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTc > 1:1675595/1‑99 (MQ=33) ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTc > 2:2542362/1‑99 (MQ=34) ggCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTc < 2:622401/99‑1 (MQ=21) gCTCATCACATCCTGGAGCTGAAGTAGGTCTCAAGGGTATGGCTGTTCTCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCg < 1:3771222/99‑1 (MQ=16) gCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGGGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGGTCg < 2:538749/99‑1 (MQ=11) tcatcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGt > 1:3329130/1‑99 (MQ=34) tcatcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGt < 2:2556598/99‑1 (MQ=34) tcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc > 2:3769112/1‑99 (MQ=34) tcaCATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTccc > 1:2560295/1‑99 (MQ=34) cacaTCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCt < 1:2996242/99‑1 (MQ=34) acaTCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTa > 2:3095356/1‑99 (MQ=34) acaTCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTa > 1:749434/1‑99 (MQ=34) tCCTGGAGCTGAAGTAGGTCCCAAAGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt < 2:602349/99‑1 (MQ=18) ccTGGAGCTGAAGTAGGTCCCAAGGATATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTg < 1:1417397/99‑1 (MQ=21) cTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGc > 1:2777479/1‑99 (MQ=34) tGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGCGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGcc > 1:2088942/1‑99 (MQ=18) tGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGcc > 1:2814985/1‑99 (MQ=33) tGGAGCTGAAGTAGGTCCCAAGGGTATGGCGGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGcc > 2:3163464/1‑99 (MQ=18) ggAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCg > 1:1806076/1‑99 (MQ=33) | GGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGT > NC_000913/3946148‑3946325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |