| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 540,558 | 0 | T | G | 33.3% | 114.8 / 29.4 | 69 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (9/37); new base G (22/1); total (31/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.43e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTG > NC_000913/540344‑540795 | aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCAATCTCCGGGTAAGGGGGGTTTTTGGTCCATTTTTCAGt > 1:1418862/1‑238 (MQ=255) cAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAg < 1:1277070/239‑1 (MQ=255) aaTGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGGTAAGGGGGGGTTTTTTTTAATTTTTCAGttca > 1:1421280/1‑235 (MQ=255) tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGGTAAGGTGTGTTTTTGTTCAATTTTTCAGTccggc > 1:491132/1‑234 (MQ=255) tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTCCCGGTTTAAGGGTGGTTTTGTTTAAtttttccgtgagtg > 2:1341422/1‑228 (MQ=255) gTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGGCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCAGTTTCCGGGTAAGGGGGGGTTATGTTCAATTTTTCAGTCCGCCGCGAAAGCCCGCTATC‑AGGGtt > 1:997821/1‑235 (MQ=255) ccttATGTTGGCCGTACCATTGGCGCGCGTAGCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCGTAAACATCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCa < 2:907317/229‑1 (MQ=255) aTGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGGGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCCGTTTTT‑TGGATTTCTGCGGTTTTTCt > 1:598148/1‑239 (MQ=255) ggCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTTTCCCGGTGAGGGGTGTTTTTGTTCACTTTTTAAGTCAGCGGCTGGCGCCTGATTTC‑AGGATTTCGGGGGTTGTTCTTTAtt > 2:1109988/1‑239 (MQ=255) ggCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTTAGGTGTGTTTTTGTTCAATTTTTCAGTCAGCCGCGGAAGCCTGTTATA‑CGGGTTTTTGTGGGTtttttttttt > 1:22738/1‑239 (MQ=255) gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCCCCGGTTAAGGGGTGTTTTTGTTTAATTTTTCCGTCAGCCGCGAAAGCCCGTTATT‑CGGATTTCAGGGGtttttttttttttttt > 1:1350765/1‑239 (MQ=255) tACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGGTTAGGGGGGTTTTTGTTCAACTTTTTCGTCAGCCGCGAAAGGCTCTTATC‑AGGGGTTTTATGGttttttttttttttttt > 2:620790/1‑238 (MQ=255) tACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTAAGGGGTGTTTTTTTTCTATTTTGCAGGCCGCCGCGCAAGACGTTTTTC‑AGGCTATCATGGGTTTTTCTTTAttttttt > 2:990832/1‑238 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCGGCTAAGGGGTGTTTATGTTTAATTTTTCAGTCAGCCGCGGAAGCCTGGTTTT‑CGGATTTTGGGGGGTTTTTTTTAtttttttg > 2:934973/1‑237 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTCCCGGGTTAGGGGGGGTTATGTTTCATTTTTTAGGCAGCCGCCGAAACCCGTTAGT‑AGGATTTCAGTGGTGTTTTTTTCtttttttc > 2:1420392/1‑237 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTTCGGGTTTGGTGTGGTTTTTTTCAATTTTTTAGGGAGCCGCGAAAGCCTGGTTTT‑AGGGGTTTAGTGGGTtttttttttttttttc > 2:429003/1‑237 (MQ=255) aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTg < 1:200364/238‑1 (MQ=255) aCCATTGGCACGCGTATCACGAAAACCAGCTTACGTGGGGATGTGATTTACGACATTGACCAGAGCTTCCCTGTTGCGCCGCAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTACAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTAAGACGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGc < 2:1023269/239‑1 (MQ=255) ccAGTGGCGCGGGTAGCACGAAAACCATCTTACGTGGTGATGGGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTAGTTTTTGCa < 2:1283080/239‑1 (MQ=255) cATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCaa < 1:275824/239‑1 (MQ=255) ttGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAaca < 1:479848/239‑1 (MQ=255) gcgcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGtt < 2:167505/239‑1 (MQ=255) aTCACGAAAGCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTGAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACGCGGTTGTGGt < 2:868920/238‑1 (MQ=255) gtgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGGGGGTTTTTTTTCAATTTTGCAGTCCGCCCCGACAGCCTGTTATT‑CGGAGTTTAGTGGTTTTTCTTTATTTTTTGTAACACGAGTTTGGTTTCTCCCCCGCtccttcct > 2:12592/1‑235 (MQ=255) tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCaa < 1:93161/203‑1 (MQ=255) tgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGATTAAGTGGGTTTTTGTTCAATTTTTCAGTCAGCCGCGCAAGCCTGTTATC‑AGGGTTTCAGTGGGTTTTTTTTATTTTTTGTAACACGGGTGTGGTTTCTCCTACGCTACTTTTTGCTTTTTAGt > 2:475207/1‑239 (MQ=255) atTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTTCTGCTAAGGGGGGTTTATGTTCAAATTTTCCGGCCGCCCCGCAACCCTGGTATC‑AGGGTTTTATGGGGTTTTTTTTTCTTTTTGTCTCACAGTTTGGGTTCCTCCTACTCCCCTTTTTTCtttttattt > 2:874460/1‑233 (MQ=255) atTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTTAGGTGGGGTTTTGTTCCATTTTTTAGTCAGCCGCGAAAGCCGGTTATC‑AGGGTTTCAGTGGGTTTTTTTTTTTTTTTTCAACACCGGTGTTGTTCTCCCCACCGTACTTTATTCTTTTccttt > 2:939026/1‑234 (MQ=255) tttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgtgtgt < 1:981426/122‑1 (MQ=255) tttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgggtgt > 2:981426/1‑122 (MQ=255) tttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTg < 1:1357278/238‑1 (MQ=255) ttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGcc < 1:934973/239‑1 (MQ=255) tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGTTTAGGGGTGTTTTTTTTTCATTTTTCGGTTAGCCGCGGAAGCCCGTTTTT‑CGGGTTTTTGTGGTTTTTCTTTTTTTTTTTTAACACGGgtgtt > 2:93161/1‑202 (MQ=255) ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTATCCGGTTAAGGGGTGTTTATGTTTAATTTTGTAGTCAGCCGCGCAAGCCTGTTCTCTGGGGTTTCTG‑GGGTTTTCTTTTTTTTTTTCAACACGGTTGTGGGTTCTCCTACGCTACTTTCTGTTTTTTTGTTGCCGCCAAATa > 2:431379/1‑239 (MQ=255) tGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCCGCTTAGGTGTGGTTATGTTTCATTTTGTAGTCAGCCGCGAAAGCCCGGTATC‑AGGATTTTAGTGGGTTTTCTTTTTTTTTTTTAACAACGGTGTGGGTCCTCCTACACTCCTTTCTTCTTTTTTTTTGCCGCaacata > 2:1357278/1‑234 (MQ=255) tGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAg < 1:724814/239‑1 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAg < 1:916945/235‑1 (MQ=255) gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGGCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc < 1:1247387/239‑1 (MQ=255) cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGttt < 1:1092198/102‑1 (MQ=255) cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGttt > 2:1092198/1‑102 (MQ=255) ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc < 1:431379/239‑1 (MQ=255) gcgcCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCCCCGGGTTAGGGGTGGTTTTGTTCCATTTTTCCGTCAGCCGCGGAAGACTGGTTTC‑AGGGTTTTTGTGGGTTTTTTTTATTTTTTTTCACACGGGTGTGGGTCTTCCTACGCCACTTTTTGCTTTTTTGTTTTCGCCAAGTAGTCTGCTTACGCGCACGCaa > 2:492135/1‑239 (MQ=255) ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTTAGGGGTGTTTTTGTTCCATTTTGCGGTCAGCCGCGAAAGCCTGTTCTC‑TGGGTTTTAGTGGTTTTTTTTTTTTTTTTGCAAAACGGTTGTGGGGCCTCCTACTGTACTTTCTGTGTTTTTGTTTCCGCAAAGTAGCCTGCCTACGCTCACTCActat > 2:560802/1‑239 (MQ=255) gTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTg < 1:444870/153‑1 (MQ=255) ttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTa < 1:560802/239‑1 (MQ=255) ttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTa < 1:990832/239‑1 (MQ=255) ccTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTCTCCCGGTAAGGGGTGTTTTTGTTCAATTTTTCAGTCAGCCGCGGAAGGCCGGTATC‑AGGATTTTAGTGGTTTTTTTTTTTTTTTTTGAAAACgggt > 2:444870/1‑151 (MQ=255) ccTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGGTAAGGGGGGTTTATGTTTAATTTTTCCGTCAGCCGCGGAAGCCCGCTATC‑AGGGTTTTTGTGGGTTTTTTTTATTTTTTGTTACACGGTTGTGGGTCCTCCTACGCCACTTTTTGCTTTTCTGTTGCCGCCAAGTAGCCTGCTTACGCTCCCGCAATATTCTTTTCTTGTTAcctc > 2:871881/1‑237 (MQ=255) cTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa < 1:871881/239‑1 (MQ=255) cagTAATCTGGCCCCTGCAATGCCTGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGGCGGGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 1:308792/136‑1 (MQ=255) cagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgtgtgt < 1:574674/60‑1 (MQ=255) tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCcgcg < 1:185762/84‑1 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGGATTCTCCGGGTAAGGGGGGGTTTTGtttca > 2:574674/1‑57 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCt > 1:724596/1‑84 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCt < 2:724596/84‑1 (MQ=255) cccTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAaca < 1:774556/123‑1 (MQ=255) ccggCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGtttt < 2:1359137/236‑1 (MQ=255) ccTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCGGGTAAGGGGTGTTTTTGTTCAATTTTTGAGGCAGCCGCGAAAGACTGtt > 2:185762/1‑84 (MQ=255) ccTGCAATGCCCGTCCTGGCGGCGGGCATTCTCCGGTTAAGGTGTTTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGtttt < 2:1421280/239‑1 (MQ=255) cccGTCCTTGCGGCGGGCATTTTCCGGTTAAGGGGGGTTTTTGTTCCATTTTTCAGTCAGCCGCGAAAGCCTGTTTTC‑AGGGTTTTTGTGGGTTTTTTTTTTTTTTTTCAACACGGTTGTGGt > 2:774556/1‑123 (MQ=255) gTCCTTGCGGCGGGCATTCTCCGGTTATGGGGGGTTTTTGTTTAATTTTTCCGGCAGCCGCGAAAGCCTGTTTTC‑AGGATTTCTGTGGTTTTTTTTTTTTTTTTTCAACACGGGTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCTGTTTCCGCAAAGTATCTCGCTTACGCTCACGCAATATGCTTTTTTTGCTACCGCACACGCCTGCTTCGCTCTGGGGGTTTTCGGTCCtcct > 2:1200307/1‑236 (MQ=255) ccTTGGGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:686728/238‑1 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:367011/238‑1 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:1341422/238‑1 (MQ=255) ccTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg < 1:475207/238‑1 (MQ=255) tttGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:1304225/238‑1 (MQ=255) gttGCGGCGGTCATTCTCCGGTTAAGTTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 2:997821/238‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:492135/239‑1 (MQ=255) cTTGCGGCGGGCATTCTCCGGTTAAGGGGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg < 1:1424306/239‑1 (MQ=255) gCATTCTCCGGTTAAGGTGTTTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATgg < 2:37575/238‑1 (MQ=255) ggTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAgg < 1:1200767/239‑1 (MQ=255) aaGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGc < 1:620790/239‑1 (MQ=255) tgtttTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg < 1:429003/238‑1 (MQ=255) | ACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATC‑AGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTG > NC_000913/540344‑540795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |