Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,529,304 | 0 | A | C | 25.7% | 249.2 / 16.8 | 106 | pseudogene (1403/2037 nt) | rhsE | pseudogene, Rhs family |
Reads supporting (aligned to +/- strand): ref base A (56/22); new base C (0/27); total (56/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.67e-12 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 107 total aligned reads displayed.
GGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGC‑GGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCCGTATCTGG > NC_000913/1529067‑1529538 | ggggAGACCGCGTGCGCAGTAAAGGCCGGGCGTGGCTTGCGCGGGGC‑GGTCTGAGGGTGGGGCACCGGGCCAGACAGGTGGGGCGGAAATCCCCCCGGGCGCAAAAATTTCTTTTTCACCCCGCCGCCCGCGGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGAGGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCCCCTGCAc < 2:1328587/239‑1 (MQ=14) gTGAAAGCCGGGCGTGGCTTGCGCAGTGC‑GGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGGTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTAACGTcgtcca > 1:379606/1‑234 (MQ=255) cggggCGTGGC‑TGGGCAGGGGGGGGCGGAGGGTGGAGCAACGGGCCAGACGGGGGGGGCCGGAATCCCCCCCGGCGCGAAAATTTCATTTTTACCCCGGCGCCCCCGGGGGCCG‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAAGGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgcag < 2:184914/236‑1 (MQ=14) gC‑GGGTTGGCGGTGGAGCATCTGGCCAGACAGGTGGAGCCGGAATACCCCCGGGCGCGAAAAGTTCATTTTTACCACTGCGACCCCCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCgggg < 1:1368029/239‑1 (MQ=255) cGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgaggag > 1:109164/1‑224 (MQ=255) cGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACtat > 2:1331095/1‑239 (MQ=255) cGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGGACtat > 1:814980/1‑239 (MQ=255) cGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCGTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGGCGGGGCTGTACtat > 1:663504/1‑239 (MQ=255) gAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACtata > 1:230059/1‑235 (MQ=255) tGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGGACTATAACCGTCACCGGCACTACGa > 1:1032891/1‑235 (MQ=255) aaTACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACAAGCCGTACCGTCTGCCAGGGCAGCAGCATGAGGAGGGGGCGGGGCTGGACTCTAACCGTCACCGGCACCACGATCCGTTGCAgggg > 2:952077/1‑239 (MQ=255) cacacCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgcag < 1:519071/172‑1 (MQ=255) ggCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCCTCACCTGCACCAGCCGGACCGTCTGCCCGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGAGCCGTTGCAgggtggggtattt > 2:234609/1‑228 (MQ=255) cgcgAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgaggag > 1:752260/1‑179 (MQ=255) tattttttCCCACGGCGCCCCCCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGACACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGa < 1:234609/236‑1 (MQ=17) ttcaCCACTGCCGCCGCGGGGCCCT‑GCCGCTGGCCCGCATCGGCGAAGCCGGAAATCCGGCGTGGCGGGGGGAGTATGATGAAG‑GGGCCAACCAGCTTAAGGGGGAAAACCCGCATCCCCGGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTggg < 2:197350/236‑1 (MQ=17) cggCGACCCCCGGGGGCTGGCAGCGGGAGCTCACCGGGAAAGACGGCAATCCGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTAAAGGGGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTgaga < 2:441545/237‑1 (MQ=17) cGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGGTGCAGGGGCGGTATATTAACCCGGAACCGACTGGGCTggggggga > 2:1348867/1‑232 (MQ=17) ccccgggggCCT‑GCCGTTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGACCCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtgga < 1:18785/233‑1 (MQ=255) ccacgGGGGCCT‑GCCGCTGGCCCTCATCAGCGAAGACGGCAATCCGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtgga < 1:1024195/238‑1 (MQ=255) gcGGGCCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtggatgga < 1:1038771/238‑1 (MQ=255) cgggggCCT‑GCCGCGGGCGCTCATCAGAGAAGCCGGAAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAAACCCCGCATCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtggatgga < 1:85930/237‑1 (MQ=255) cGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCg > 2:333948/1‑197 (MQ=255) cGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCg < 1:333948/197‑1 (MQ=255) gtccT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGAGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCCCCTGCACCAGCCGTACCGTCTGCCATGGCAGCAGCATGCAGAGGAGTAGGGGCTGTACTATCACCGTCACCGGCACTACGATCCGTTGAAGGGGCGGGCTATCACACCGGACACGATTGGGGTGAGAGGTGGCAGGAataa > 2:1158159/3‑238 (MQ=17) t‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc > 1:490605/1‑147 (MQ=255) t‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc < 2:490605/147‑1 (MQ=255) gCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATc > 1:572788/1‑239 (MQ=255) ggCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGgcag > 2:1132490/1‑118 (MQ=255) ggCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCAGCACCTGCCCCAGCCGTACCGTCTGCCAGGgcag < 1:1132490/118‑1 (MQ=255) tcatcaGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGGATATCACCCCGGACCCGATTGGGGTGAGAGGGGGATGGAATATGGATCAGTATCCGTTg > 1:401551/1‑239 (MQ=255) atcgGCGAAGACGGCAATCCGGCGTGGCGCGGGGAGTATGATGAAG‑GGGGCACCCAGCTTAATGAGGAAAACCCGCTTCCCTTGCACCAGCCGTACCGTCTGCCAGGgcag < 2:362536/111‑1 (MQ=17) aaaGACGGAAATACGGGGGGGCGCGGGAATTATGA‑GAATGGGGGCAACCGCCTTAATGAGGAAACCCGGCACCCCCCGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCa < 2:401551/237‑1 (MQ=18) aCGGCAATGCGGCGGGGCGCGGGGAGTATGATGAAG‑GGGGCAACCAGTTTAATGAGGAGAACCCGCATCACCGGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATAc < 1:1348867/237‑1 (MQ=255) cAATACGGCGTGGCGCGGGGAGGATGATGAAT‑GGGGCACCCGTCTTAATGAGGAGACCCCGCTTCACCTCCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGtata < 2:407538/167‑1 (MQ=17) aatcggggggggCGGGGGGAGTATGATGAGT‑GGGGCACCCAGCTTAGGGAGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACa < 2:1041105/223‑1 (MQ=18) tACGGCGTGGCGGGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAAGGGGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAg < 1:344708/154‑1 (MQ=255) cGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTAt < 1:554698/203‑1 (MQ=255) cGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTAt > 2:554698/1‑203 (MQ=255) tGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGGATATCACCCCGGa > 1:407538/1‑167 (MQ=255) cgcgGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCCTGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCCATACGGTCCGTTGCCGGGGCGGtcta > 2:344708/1‑154 (MQ=17) cggagggttggatgaAG‑GGGCCACCCAGCTTAAGGAGGAGAACCCGCATCCCCGGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATgggg < 2:572788/228‑1 (MQ=18) aGTATGATGAAT‑GGGGCAACCAGCTTAAGGAGGAGACCCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAgggg < 2:785881/140‑1 (MQ=255) aGTATGAGGAAG‑GGGCCACCCAGCTTAAGGAGGAGACCCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTa < 2:82093/103‑1 (MQ=17) aGTAGGATGAAT‑GGGGCAACCAGCTTAAGGAGGAGACCCCGCATCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTa < 2:1111462/190‑1 (MQ=255) atgatgAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCg > 1:217157/1‑239 (MQ=255) atgaCT‑GGGGCAACCAGCTTAATGAGGAGACCCCGCACCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAat < 2:1192297/179‑1 (MQ=255) atgaAT‑GGGGCAACCAGCTTAAGGGGGAGAACCCGCATCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATgag < 2:932848/83‑1 (MQ=14) tgaAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGTTTg > 2:1137232/1‑239 (MQ=255) tgaAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTg > 1:1205837/1‑239 (MQ=255) tgaAG‑GGGTCAACCAGCTTAAGGAGGAGAACCCTCATCCCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGAtt < 1:952077/238‑1 (MQ=255) gaAG‑GGGGCCACCAGCTAAATGAGGAGAACACGCATCCCCGGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTga < 1:296420/239‑1 (MQ=255) aaT‑GGGGCACCCAGCTTAATGAGGAGACCCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc < 2:26001/90‑1 (MQ=17) aaT‑GGGGCAACCAGCTTAAGGAGGAGAACCCGCATCCCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc < 2:316390/90‑1 (MQ=17) atgggggCACCCGCCTTAAGGAGGAGACCCCGCACCCCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTAt < 2:1024651/179‑1 (MQ=18) aT‑GGGGCCACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAgggg > 2:1314761/1‑130 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGt > 1:82093/1‑103 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCa > 1:785881/1‑140 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTgag > 2:670856/1‑162 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTgag < 1:670856/162‑1 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCg > 1:1111462/1‑190 (MQ=255) aT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTgaga > 2:1131334/1‑239 (MQ=255) ggggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGGGATAGACCCAATGGGGTTAGATGGGATTGAGAat > 1:1306124/1‑239 (MQ=255) gggCAACCAGCTTAATGAGGAAACCCCGCACCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCCCCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTgag < 1:626292/235‑1 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGt > 2:91300/1‑79 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGt < 1:91300/79‑1 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGc > 1:932848/1‑85 (MQ=255) ggCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAatat > 1:1400329/1‑239 (MQ=255) cAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt > 1:1192297/1‑179 (MQ=255) ccAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATaa > 1:26001/1‑90 (MQ=255) ccAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATaa > 1:316390/1‑90 (MQ=255) ccAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTc < 1:1419781/95‑1 (MQ=255) ccAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTc > 2:1419781/1‑95 (MQ=255) ccAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGGGGATGGAATATGTATCAGTATCCGt > 1:1024651/1‑182 (MQ=255) ggtaaaTGAGGAGAACCCGCAGCCCCGGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTAGAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATAc < 2:576397/187‑1 (MQ=255) ctaatgggagcgaACCCACCTCACCTGGCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAgg < 2:663504/228‑1 (MQ=255) cTTAGTGAGGAGAACCCGCACCCCCGGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGtggatgga < 2:639001/160‑1 (MQ=255) cTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGGGGGAATATGGATCAGTATCCGTTGGATCCCATACAAGTGATAGGACCAATGGGGGTCGGAGCGATTGAGGATATGACAt > 2:626292/1‑235 (MQ=21) cTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGGCACCGGCACTACGATCCGTTGCAGGGGCGGGATATTACCCCGGACCCGGTTGGGTGGAGAGGGGGGTGGGATAAGTATCAGTATCCGTTGAATCCCCTACAAGTGATAGACACAATGGGGTTAGAAGCGGTTGTGCATATGACAGCAgg > 2:168548/1‑239 (MQ=18) gaggagAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGGATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACt > 1:364287/1‑239 (MQ=255) gcgaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGCTTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGa > 1:576397/3‑191 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGt > 1:1093032/1‑162 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAAt > 2:121497/1‑196 (MQ=255) agaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAAt < 1:121497/196‑1 (MQ=255) agaACCCGCATCACCTGCACCAGCCGAACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCa > 1:639001/1‑160 (MQ=255) gaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATc < 1:882181/158‑1 (MQ=255) gaACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATc > 2:882181/1‑158 (MQ=255) cccGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTACTTTAt > 2:498479/1‑238 (MQ=255) cccGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTAt > 1:593262/1‑238 (MQ=255) ccGCATCACCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTGATTTATGc < 1:1331095/239‑1 (MQ=255) gCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCg < 2:1079462/102‑1 (MQ=255) gCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCg > 1:1079462/1‑102 (MQ=255) gCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACaa < 2:735663/175‑1 (MQ=255) gCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACaa > 1:735663/1‑175 (MQ=255) acatcTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATACGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCCGTAt < 2:1400329/235‑1 (MQ=255) acgtGCGCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGaa < 1:1287740/157‑1 (MQ=255) aCCTGCCCCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTga < 2:1054680/126‑1 (MQ=255) aCCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTga > 1:1054680/1‑126 (MQ=255) ccTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCCGTa > 2:1198636/1‑235 (MQ=255) cTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCCGTATCTgg < 1:984612/239‑1 (MQ=255) | GGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGC‑GGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCT‑GCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAAT‑GGGGCAACCAGCTTAATGAGGAGAACCCGCATCACCTGCACCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAGTCGGGGCTGTACTATAACCGTCACCGGCACTACGATCCGTTGCAGGGGCGGTATATCACCCCGGACCCGATTGGGTTGAGAGGTGGATGGAATATGTATCAGTATCCGTTGAATCCCATACAAGTGATAGACCCAATGGGGTTAGATGCGATTGAGAATATGACATCAGGTGGACTAATTTATGCCGTATCTGG > NC_000913/1529067‑1529538 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |