New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3264077	157 (1.050)	4 (0.030)	4/280	12.3	2.8%	coding (941/1332 nt)	tdcC	L‑threonine/L‑serine transporter
	?	NC_000913	= 3264138	132 (0.950)					coding (880/1332 nt)	tdcC	L‑threonine/L‑serine transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3263829‑3264077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattccagtgCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTCCTGAAGTTTGGTTATAAAGGCGACAAAACTAAAGTGTCGCTGGGTAAACTGAACACTATCAGCATGATCTTCATCATG  <  NC_000913/3264138‑3263902                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  1:68586/239‑1        TGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCA                                                                                                                                                                                                                                                  >  1:1544529/1‑239                      CAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  2:586583/1‑218                      CAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  1:586583/218‑1                                       TTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  1:2194562/1‑201                                       TTCGGGTTGGCGTAGCCAACAACCCATTTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTC                                                                                                                                                                                                                                                    >  1:1921555/1‑206                                       TTCGGGTTGGCGTACGGAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  2:2194562/201‑1                                                                       GCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  2:355799/169‑1                                                                       GCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  1:355799/1‑169                                                                                                   TTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  2:411701/141‑1                                                                                                   TTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  1:411701/1‑141                                                                                                                                 TCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGCGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  2:1721058/1‑111                                                                                                                                 TCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGAC                                                                                                                                                                                                            >  2:49754/1‑156                                                                                                                                 TCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGAC                                                                                                                                                                                                            <  1:49754/156‑1                                                                                                                                 TCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  1:1721058/111‑1                                                                                                                                                           CAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTAC                                                                                                                                                                                                      <  1:1292439/136‑1                                                                                                                                                           CAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTAC                                                                                                                                                                                                      >  2:1292439/1‑136                                                                                                                                                                           TCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         <  1:828970/69‑1                                                                                                                                                                           TCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCA                                                                                                                                                                                                                                                         >  2:828970/1‑69                                                                                                                                                                                                                                                  TTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTCCTGAAGTTTGGTTATAAAGGCGACAAAACTAAAGTGTCGCTGGGTAAACTGAACACTATCAGCATGATCTTC        >  1:1581735/1‑239                                                                                                                                                                                                                                                        TGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTCCTGAAGTTTGGTTATAAAGGCGACAAAACTAAAGTGTCGCTGGGTAAACTGAACACTATCAGCATGATCTTCATCATG  >  2:1438430/1‑239                                                                                                                                                                                                                                                        TGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTC                                                                                <  2:1214512/161‑1                                                                                                                                                                                                                                                        TGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTC                                                                                >  1:1214512/1‑161                                                                                                                                                                                                                                                        TGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACC                                                                                                                                                                                                           >  2:300839/1‑38                                                                                                                                                                                                                                                        TGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACC                                                                                                                                                                                                           <  1:300839/38‑1                                                                                                                                                                                                                                                         GCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTCCTGAAGTTTGGTTATAAAGGCGACAAAACTAAAGTGTCGCTGGGTAAACTGAACACTATCAGCATGATCTTCATCAT   <  1:1369286/237‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3263829‑3264077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattccagtgCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATGCGGCTTCCATCATCGCACTCGTGGCTATCTTCAAATCTTTCTTCGGTCACTATCTGGGAACGCTGGAAGGTCTGAATGGCCTGGTCCTGAAGTTTGGTTATAAAGGCGACAAAACTAAAGTGTCGCTGGGTAAACTGAACACTATCAGCATGATCTTCATCATG  <  NC_000913/3264138‑3263902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.