New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	266341 =	21 (0.480)	4 (0.100)	4/286	4.2	11.6%	coding (213/444 nt)	yafY	lipoprotein, inner membrane; degP regulator; CP4‑6 prophage
	?	NC_000913	266549 =	41 (0.990)					coding (5/444 nt)	yafY	lipoprotein, inner membrane; degP regulator; CP4‑6 prophage
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCACTTCTGTCATCGCATGCGATGAGAAACAGAGTGGTGGCAACCAGCG  >  NC_000913/266131‑266525                                                                                                                                                                                                                    |                                                                                                                                                                                             cGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACCGGCGGGTGT‑GGTAAAAC‑Ctctaagt                                                                                                                                                                            >  2:7159/1‑222 (MQ=255)                                                  aaGTTTTTTTCTTTGGTATACGGATCCGTCACCTCCTGGTATTCCAGTTTGATGTTAGCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATcc                                                                                                                         <  2:464075/228‑1 (MQ=255)                                                                           ccGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGG‑A‑CGGAAAACACTCCAA‑GTGGGGCCCGGGAAGAAGTGAAACATGGGCCCA‑TCTTCTCTGACATCAACCTCGTGGCGGA‑CGACATCAccataaa                                                                                               >  2:194086/1‑222 (MQ=255)                                                                             gTCCCCTTCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAAcg                                                                                              <  1:194389/227‑1 (MQ=255)                                                                               ccactactGGTATTCCAGTTTGATGTTACCGGCAATACCCAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAAcgcg                                                                                            <  2:448127/221‑1 (MQ=255)                                                                                    cctGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGc                                                                                                                                    <  1:1020/183‑1 (MQ=255)                                                                                                                       aGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGG‑A‑CGTaa                                                                                                                                                                                        >  2:547864/1‑98 (MQ=255)                                                                                                                        gcgcATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTaaa                                                                                                                                                                                       <  1:548745/98‑1 (MQ=255)                                                                                                                         cgcATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGG‑A‑CGGAAAAA‑CTGCaaag                                                                                                                                                                            >  2:235621/1‑105 (MQ=255)                                                                                                                          gcATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGt                                                                                                                                                                           <  1:235983/107‑1 (MQ=255)                                                                                                                                  caGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGaa                                                                                                 <  1:480999/171‑1 (MQ=255)                                                                                                                                     tGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCAc                                               <  1:254797/218‑1 (MQ=255)                                                                                                                                     tGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑AGGAAAAA‑CCTCAAAGGGGGGCCGGGGAAGAAGG‑CAACCCGGGGCCCTTTTTTCCTGACAACATCCCGGTTGGGGACCCACACACCGGAAAACCGTGGGGGGGGGGGCTTTAAATTTTTTAACGGCCTTCAGGTGA‑CACATCTGTCATc                                     >  2:9609/1‑228 (MQ=255)                                                                                                                                      ggCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑Cca                                                                                                           <  1:496990/157‑1 (MQ=255)                                                                                                                                            aCGGTTTTTTCCTGCATTTCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCACTTCTGTCATCGCATGCg                              <  1:9621/228‑1 (MQ=255)                                                                                                                                                                        agtagtaACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAATC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCACTTCTGTCATCGCATGCGATGAGAAACAGAGTGGTGGCAACCAgcg  <  1:7166/228‑1 (MQ=255)                                                                                                                                                                        agtagtaACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGG‑ACCGAAAAAC‑CCCCAGGCGGGGACC‑GACAAATAGT‑CAACCCCTGGCCCTTCTTCGCTGCCATCATTCTGGTGGCCGG‑CCACCACACCGGAACAAGGGGGGGGGAGGGCCCTAAAATTACTg                                                                  >  2:101372/1‑164 (MQ=255)                                                                                                                                                                         gtagtaACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGa                                                                 <  1:101521/164‑1 (MQ=255)                                                                                                                                                                                  gCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCACTTCTGTCATCGCATGCGATGAGAAACagag                 <  1:21332/203‑1 (MQ=255)                                                                                                                                                                                             aGCCATCGGGCGACTGGCGGGG‑A‑CGTAAAAA‑CTGCAAGGGGGGGCCGGGGAAAGAGT‑GAAACTGTGAGCCTTTTTTGCTTGCATTCTCCttgtggg                                                                                                                  >  2:192784/1‑95 (MQ=255)                                                                                                                                                                                              gCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCt                                                                                                                 <  1:193083/96‑1 (MQ=255)                                                                                                                                                                                                                    |                                                                                                                                                                                             CGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCGCATTCATCAGTGGCTGGACGGTTTTTTCCTGCATATCCACGAGGTAGTAGTAACTGCCATCCTCGCAGCCATCGGGCGACTGGCGGGT‑A‑CGTAAAAC‑CTGCAAGGTGGGACCGGATAAGTAGT‑CAACCTGTGACCATTCTTCGCTGACATCATCCTGGTGGCTGA‑CCACATCACTGAAACGCGGTGGGGTGAGGTCCTTAAATTTACTGATGGCCTTCAGGTCATCACTTCTGTCATCGCATGCGATGAGAAACAGAGTGGTGGCAACCAGCG  >  NC_000913/266131‑266525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.