New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4096897 =	56 (1.270)	4 (0.100)	4/284	4.2	6.3%	coding (552/1470 nt)	rhaB	rhamnulokinase
	?	NC_000913	4097035 =	66 (1.600)					coding (414/1470 nt)	rhaB	rhamnulokinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGCACACC  >  NC_000913/4096812‑4097251                                                                                                                                                                                                                                |                                                                                                                                                                                                                         gatggatCGGACTACCAAACCAGGCTTTTTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAATCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATaaa                                                                                                                                                                                                                      <  2:29507/222‑1 (MQ=255) gATGCGTCGGGCGACCAATCCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATaaa                                                                                                                                                                                                                      <  2:457369/228‑1 (MQ=255)  aTGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAg                                                                                                                                                                                                                     >  2:287390/1‑228 (MQ=255)    gCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCg                                                                                                                                                                                                                   <  1:358722/228‑1 (MQ=255)      gTCGGGCGACCAAACCAGGCGTTGTTGGCCCCGTTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGGCCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTa                                                                                                                                                                                                                 <  1:133509/228‑1 (MQ=255)                         cTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGa                                                                                                                                                                                              <  1:581614/228‑1 (MQ=255)                            tgttgGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGc                                                                                                                                                                                           >  2:542878/1‑228 (MQ=255)                                                         tCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGAt                                                                                                                                                                                                                         >  1:548181/1‑169 (MQ=255)                                                          cGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATa                                                                                                                                                                                                                        <  2:547300/169‑1 (MQ=255)                                                            tCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAg                                                                                                                                                            >  2:608203/1‑227 (MQ=255)                                                              ccAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAg                                                                                                                                                            <  1:186842/225‑1 (MQ=255)                                                                     tcgCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTtgttgttgt                                                                                                                                                  <  1:609179/228‑1 (MQ=255)                                                                     tcgCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTtgttgttgt                                                                                                                                                  >  2:243852/1‑228 (MQ=255)                                                                       gCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGGTAAATATCGCGTTTGCCGAGTTGTTGTTGTGc                                                                                                                                                >  2:134434/1‑228 (MQ=255)                                                                              atattgaCCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTg                                                                                                                                             <  1:287848/224‑1 (MQ=255)                                                                                   gaCCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGc                                                                                                                                                                                        >  1:591578/1‑176 (MQ=255)                                                                                   gaCCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCTGAGTTGTTGTTGTGCCTGCGCCATTAg                                                                                                                                    >  2:382982/1‑228 (MQ=255)                                                                                    aCCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCt                                                                                                                                                                                       <  2:590633/176‑1 (MQ=255)                                                                                     ccAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGc                                                                                                                                  <  2:498704/228‑1 (MQ=255)                                                                                         ttGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTg                                                                                                                                                                 >  1:40674/1‑193 (MQ=255)                                                                                         ttGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCAtt                                                                                                                              >  2:30041/1‑228 (MQ=255)                                                                                          tGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGc                                                                                                                                                                <  2:40614/193‑1 (MQ=255)                                                                                                gTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGTTGCgg                                                                                                                       >  1:487072/1‑228 (MQ=255)                                                                                                           ggTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCt                                                                                                                                                                                       >  1:435492/1‑153 (MQ=255)                                                                                                            gTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTa                                                                                                                                                                                      <  2:434782/153‑1 (MQ=255)                                                                                                                      aGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCACACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACggg                                                                                                   >  2:61646/1‑226 (MQ=255)                                                                                                                       gTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACggg                                                                                                   >  2:293430/1‑225 (MQ=255)                                                                                                                          cATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGcc                                                                                             <  1:30087/228‑1 (MQ=255)                                                                                                                                gCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACg                                                                                       >  1:226796/1‑228 (MQ=255)                                                                                                                                    gTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAACGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGa                                                                                   <  1:543754/228‑1 (MQ=255)                                                                                                                                     tCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGAc                                                                                  >  2:682059/1‑228 (MQ=255)                                                                                                                                         gCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATGAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGcc                                                                                             >  2:386329/1‑213 (MQ=255)                                                                                                                                          cGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATGAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGccc                                                                                            <  1:386969/213‑1 (MQ=255)                                                                                                                                              aaCTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGt                                                                         >  1:651194/1‑228 (MQ=255)                                                                                                                                                   aaGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGag                                                                     >  1:313186/1‑227 (MQ=255)                                                                                                                                                        aTCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCt                                                                                                                     >  2:331499/1‑174 (MQ=255)                                                                                                                                                         tCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCa                                                                                                                                >  2:446268/1‑162 (MQ=255)                                                                                                                                                         tCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTa                                                                                                                    <  1:332043/174‑1 (MQ=255)                                                                                                                                                         tCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGcac                                                               >  1:624670/1‑227 (MQ=255)                                                                                                                                                          ccGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCAt                                                                                                                               <  1:446999/162‑1 (MQ=255)                                                                                                                                                           cGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAGACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGag                                                                     >  2:450324/1‑219 (MQ=255)                                                                                                                                                            ggCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAGACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGagc                                                                    <  1:451058/219‑1 (MQ=255)                                                                                                                                                             gCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGt                                                          >  1:313036/1‑228 (MQ=255)                                                                                                                                                                  agcagAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACg                                                     >  2:203157/1‑228 (MQ=255)                                                                                                                                                                     agagCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGccc                                                  <  1:134633/228‑1 (MQ=255)                                                                                                                                                                       agCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTAc                                                                                                                                                                                     >  1:374463/1‑95 (MQ=255)                                                                                                                                                                        gCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACg                                                                                                                                                                                    <  2:373845/95‑1 (MQ=255)                                                                                                                                                                             aGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGc                                                                                              >  2:166087/1‑176 (MQ=255)                                                                                                                                                                              gCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGcc                                                                                             <  1:166338/176‑1 (MQ=255)                                                                                                                                                                                         aaTAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTAc                                                                                                                                                                                     >  1:375765/1‑77 (MQ=255)                                                                                                                                                                                          aTAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACg                                                                                                                                                                                    <  2:375146/77‑1 (MQ=255)                                                                                                                                                                                            aaGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTAt                            <  1:203470/227‑1 (MQ=255)                                                                                                                                                                                                tCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAgt                                                                                                                                                           >  2:225779/1‑96 (MQ=255)                                                                                                                                                                                                 cAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAgtt                                                                                                                                                          <  1:226125/96‑1 (MQ=255)                                                                                                                                                                                                   ggTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTgg                                                                                                                                                                                               >  1:87212/1‑57 (MQ=255)                                                                                                                                                                                                   ggTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGAATCAATCCCAATGCTATCGATACGa                    >  1:171050/1‑228 (MQ=255)                                                                                                                                                                                                    gttgttGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGa                                                                                                                                                                                              <  2:87084/57‑1 (MQ=255)                                                                                                                                                                                                         tgCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGc                                                                                                                                                                                        >  2:522193/1‑58 (MQ=255)                                                                                                                                                                                                          gCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCt                                                                                                                                                                                       <  1:523037/58‑1 (MQ=255)                                                                                                                                                                                                           cTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCTGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCt              <  1:383613/226‑1 (MQ=255)                                                                                                                                                                                                           cTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCt              <  2:226449/226‑1 (MQ=255)                                                                                                                                                                                                              cGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAgttgttg                                                                                                                                                      >  1:350196/1‑87 (MQ=255)                                                                                                                                                                                                               gTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAgttgttgt                                                                                                                                                     <  2:349608/87‑1 (MQ=255)                                                                                                                                                                                                                 cAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGca      <  1:293901/228‑1 (MQ=255)                                                                                                                                                                                                                     gcacgcaACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGCACAcc  <  2:312688/228‑1 (MQ=255)                                                                                                                                                                                                                     gcacgcaACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGCACAcc  <  2:650143/228‑1 (MQ=255)                                                                                                                                                                                                                          caACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCt                                                                                                                                                                                       >  1:212833/1‑42 (MQ=255)                                                                                                                                                                                                                           aaCTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTa                                                                                                                                                                                      <  2:212510/42‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                         GATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGCACACC  >  NC_000913/4096812‑4097251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.