BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,755,880	0	G	A	20.5%	1088.5 / 256.6	510	intergenic (+502/‑279)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
Reads supporting (aligned to +/- strand): ref base G (105/299); new base A (11/93); total (116/394)
Fisher's exact test for biased strand distribution p-value = 5.97e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.60e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 522 total aligned reads displayed.

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

 aaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAATCGTAAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGt                                                                                                   >  2:4847806/1‑99 (MQ=255)

 aaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGt                                                                                                   >  2:2345898/1‑99 (MQ=255)

  aaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTa                                                                                                  >  2:4468953/1‑99 (MQ=255)

  aaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCATCCGCAGCTGGCAAGCGAATGTa                                                                                                  <  2:1436661/99‑1 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAga                                                                                              <  1:4181672/99‑1 (MQ=255)

        tCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgact                                                                                            >  1:2665263/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAATCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAgactga                                                                                          >  2:3110654/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgactga                                                                                          >  2:3657381/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGATGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCGGTCCGCAGCTGGCAAGCGAATGTAAAgactga                                                                                          >  2:1883777/1‑99 (MQ=255)

                  gacctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCAt                                                                                  <  2:4197790/97‑1 (MQ=255)

                   cccTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATg                                                                                 >  2:1006355/1‑99 (MQ=255)

                   cccTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATg                                                                                 >  2:2145901/1‑99 (MQ=255)

                   cccTGCCTGGGGTTGAAGCGGTAAAAATTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATg                                                                                 >  2:1558605/1‑99 (MQ=255)

                    cctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgt                                                                                <  1:3652347/99‑1 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgta                                                                               <  2:4774426/99‑1 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATgta                                                                               <  1:3485658/99‑1 (MQ=255)

                       gcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgtagt                                                                             <  2:3310253/99‑1 (MQ=255)

                        cctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgtagta                                                                            <  1:445967/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGTTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:1156369/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:1014894/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:4841815/99‑1 (MQ=255)

                          tgtggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAcc                                                                          <  1:154698/96‑1 (MQ=255)

                          tgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGCAcc                                                                          <  1:3384265/99‑1 (MQ=255)

                            gtgTTAAAGTGTTAAAACTTTATTTTTTTAGTTTGTTAGTTGCGGGTCCGTCGGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4264890/97‑1 (MQ=255)

                            gggTTGAAGTGTTAATTCTTAATCTGGCTAGTTTGTTAGTGGTGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3346768/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTTATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:713793/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATTAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGAGTGACTAAGCATGTAGTACCGa                                                                        <  1:5061084/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCATGCTAGTTTGTTAGTGGCGTGTCGGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1920302/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:641074/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1063767/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4714709/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4412727/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:924532/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3942396/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4059730/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2387366/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2255669/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3293846/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4987026/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1459244/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:818041/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:854592/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2328487/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1838680/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCCTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1194660/99‑1 (MQ=255)

                             tgTTGATGTGTTGACACTTATTCAGGCTAGTGTGTTATTGGCTTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2618788/98‑1 (MQ=255)

                             ggTTGAAGTGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGGGTGTCCGTCCGCAGCGGGCAAGCGAATGGAAAGACTGACTAAGCATGTAGTTCCGAg                                                                       <  1:1289205/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:5190479/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:4786029/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:4539404/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  2:4524074/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2191653/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3794095/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2759828/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2968670/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3060064/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1980373/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:4142385/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3847652/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1565864/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2527644/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:5089693/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAAGCAGGCTAGTTTGTTACTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:4912100/99‑1 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAgg                                                                      >  2:165934/1‑99 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAgg                                                                      <  2:2781500/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTTATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:4337824/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCATGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:547127/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     >  1:3131013/1‑99 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:2453119/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCGAGTTTGTTATTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:3711411/99‑1 (MQ=255)

                               ttGAAGCGTGAAAACTTAATCAGTCTAGTTTGTTAGTGGCGTATCCGTCCGCAGCTGGCACGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:4592563/99‑1 (MQ=255)

                               ttGAAGCGTAAAAACTTAATAAGGCTAGTTTGTTAGTGGCGTGTCCGGCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:2874438/99‑1 (MQ=255)

                                tGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGAt                                                                    >  2:1277257/1‑99 (MQ=255)

                                 gAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAATGGCATGTCCGTCCGCAGCTAGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATg                                                                   <  1:1101163/99‑1 (MQ=255)

                                   aGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTa                                                                 >  2:3915521/1‑99 (MQ=255)

                                       ttAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGaa                                                             >  1:3449269/1‑99 (MQ=255)

                                       ttAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGaa                                                             <  1:3171502/99‑1 (MQ=255)

                                          aaaCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAAttt                                                          <  2:395063/99‑1 (MQ=255)

                                              ttAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGa                                                      <  1:1396334/99‑1 (MQ=255)

                                               tAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAc                                                     <  2:853816/99‑1 (MQ=255)

                                                aaTCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAcg                                                    >  1:1692488/1‑99 (MQ=255)

                                                   cAGGCTAGTTTGTTAGGGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCgg                                                 <  1:782426/99‑1 (MQ=255)

                                                    aGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCggg                                                <  2:2551432/99‑1 (MQ=255)

                                                     ggCGAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGt                                               >  2:3552009/1‑99 (MQ=255)

                                                         aGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCaa                                           <  2:3462542/99‑1 (MQ=255)

                                                         aGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCaa                                           <  2:4337329/99‑1 (MQ=255)

                                                                tAGTGGCGTGTCCGTCCTCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGAAGGAATTTCGGACGCGGGTTCAACTCCCGc                                    <  1:3575441/99‑1 (MQ=255)

                                                                 aGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCAGACGCGGGTTCAACTCCCGcc                                   <  2:5071098/99‑1 (MQ=255)

                                                                   tGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAg                                 <  1:1617426/99‑1 (MQ=255)

                                                                      cGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTc                              <  1:2570739/99‑1 (MQ=255)

                                                                          tccgtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTccacc                          <  2:2225176/99‑1 (MQ=255)

                                                                              tccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCaaaa                      <  1:2040565/99‑1 (MQ=255)

                                                                              tccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCaaaa                      >  2:630208/1‑99 (MQ=255)

                                                                                   aGCTTGCAAGCTAATGTAAATACTGACTAAGCATTTATTACCTAGTATGTATTAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATtctc                 <  1:2082127/99‑1 (MQ=255)

                                                                                      tGGCAAGCGAATGTAAAGTCTTGCTGACCATGTAGTACCGAGTATGTATGAATTTCGGACGCTGGTTCAACGCCCGCCAGTTCTACCAAAATGCTCCAt              <  2:762571/99‑1 (MQ=255)

                                                                                          aaGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGt          >  2:1167116/1‑99 (MQ=255)

                                                                                                aTGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTAc    >  1:1792338/1‑99 (MQ=255)

                                                                                                 tGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTAcc   <  1:2138413/99‑1 (MQ=255)

                                                                                                  gTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCa  <  1:2476646/99‑1 (MQ=255)

                                                                                                  gTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAACTTCGGACGCGGGTTCAACTCCCGCCAGATCCTCCAAAATTCTCCATCGGTGATTACCa  <  1:4648626/99‑1 (MQ=255)

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`