BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,755,880	0	G	A	26.8%	817.7 / inf	490	intergenic (+502/‑279)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
Reads supporting (aligned to +/- strand): ref base G (79/276); new base A (13/117); total (94/396)
Fisher's exact test for biased strand distribution p-value = 2.44e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.84e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 500 total aligned reads displayed.

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

  aaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTa                                                                                                  <  2:717055/99‑1 (MQ=255)

   agagATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATaa                                                                                                 >  2:3664552/1‑99 (MQ=255)

     agaTCGCGTGGAAGCCCTGCCTGGGGTTGAGGCATTAAAACTTAATCAGGCTAGGTTGTTAGTGGCGTATCCGTCCGCAGCTGGCAAGCGAATTTaaac                                                                                               <  2:931330/99‑2 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAga                                                                                              <  1:2370423/99‑1 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGGTGAAGCTTTAAAACTTAATCAGGCTAGTTTTTTATTGTCGTGTCCGTCCGCAGCTGGCAAGCGCATATAAAga                                                                                              >  2:3356194/1‑99 (MQ=255)

       aTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAgac                                                                                             >  2:1150595/1‑99 (MQ=255)

        tCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgact                                                                                            <  2:2458121/99‑1 (MQ=255)

        tCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgact                                                                                            >  2:1931023/1‑99 (MQ=255)

            gTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAgactgact                                                                                        >  2:1674704/1‑99 (MQ=255)

             tGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTa                                                                                       >  1:930864/1‑99 (MQ=255)

                aaGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGc                                                                                    <  2:3216428/99‑1 (MQ=255)

                aaGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGc                                                                                    >  2:271750/1‑99 (MQ=255)

                   cccTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATg                                                                                 <  1:1483817/99‑1 (MQ=255)

                    cctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgt                                                                                <  1:2182995/99‑1 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgta                                                                               >  1:1946531/1‑99 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATgta                                                                               <  1:2339397/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAc                                                                           <  2:1011464/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:1059943/99‑1 (MQ=255)

                          tgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAcc                                                                          <  1:1596819/99‑1 (MQ=255)

                          tgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAcc                                                                          <  1:633215/99‑1 (MQ=255)

                            gtgTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1008376/97‑1 (MQ=255)

                            gggTTGAAGCGTTAACACTCAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1222786/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCATGCTAGTTCGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGGGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3836315/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGTCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3571459/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCTAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3182971/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3026936/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1990753/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:366950/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4040620/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3299987/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1804401/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2985829/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1428835/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:269362/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2531385/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2450728/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:433389/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1335252/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:260961/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3950902/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2491180/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4118585/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1081545/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3431009/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3471559/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2440221/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2049755/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:762189/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTACTGGCGTGTCCGTCCGCAGCGGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:972727/99‑1 (MQ=255)

                            gggTAGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:52049/99‑1 (MQ=255)

                            gagTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1033705/97‑1 (MQ=255)

                             tggtGAAGCGTGAAAGCGTAATCAGGCAAGTTGGTTAGTGGCGTGTCCTGCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2069899/96‑1 (MQ=255)

                             ggTTGAAGCGTTACACATTAATCAGGATAGTTTGTTAGTGGCGTGTCCGTCAGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:190921/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTATAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3766157/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:728823/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1869135/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:668627/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2132478/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1961812/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:620649/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2917677/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3220697/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3375796/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:485261/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2234210/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2828271/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:868997/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:592008/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3655468/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:475404/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGGCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:115083/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTCAGTGGCGTGTCCGTCCGCAGCTCGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:835524/99‑1 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAgg                                                                      >  2:612837/1‑99 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAgg                                                                      <  2:2536119/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:3089424/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:1282749/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:1386744/99‑1 (MQ=255)

                                tGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGAt                                                                    <  1:3896239/99‑1 (MQ=255)

                                tGAAGCGTTAAAACGTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGAt                                                                    <  1:829805/99‑1 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                <  1:3514183/99‑1 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                <  1:95480/99‑1 (MQ=255)

                                       ttAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGaa                                                             >  1:278882/1‑99 (MQ=255)

                                          aaaCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAAttt                                                          >  2:1576851/1‑99 (MQ=255)

                                           tagttAATCAGGCTAGTGGTTTATGGGCTGGTCCTGCCGCAGGTGGCAAGCGAGTGGAAAGACTTACTAAGCATGTAGTACCGAGGATTTAGGAATTTc                                                         <  2:2026557/96‑1 (MQ=255)

                                            aCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCg                                                        >  1:896473/1‑99 (MQ=255)

                                               tAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAc                                                     <  2:823228/99‑1 (MQ=255)

                                               tAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAc                                                     >  2:3480700/1‑99 (MQ=255)

                                                aaTCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAcg                                                    >  1:1655337/1‑99 (MQ=255)

                                                aaTCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAcg                                                    >  1:690547/1‑99 (MQ=255)

                                                    aGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCggg                                                <  2:3081347/99‑1 (MQ=255)

                                                      tcTAGTTTGTTAGTGGCGTATCCGTCCGCAGCTGGCCAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGCATGTAGGAATTTCGCACGCGAGtt                                              <  2:89035/98‑1 (MQ=255)

                                                      gCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGtt                                              <  2:2090501/99‑1 (MQ=255)

                                                           tttGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACt                                         <  2:1768683/99‑1 (MQ=255)

                                                                  gTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCa                                  >  2:3988962/1‑99 (MQ=255)

                                                                        tgtCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTcca                            <  2:1337129/99‑1 (MQ=255)

                                                                                 gCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATtc                   <  2:3890116/99‑1 (MQ=255)

                                                                                 gCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATtc                   >  2:4037387/1‑99 (MQ=255)

                                                                                   aGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATtctc                 <  1:1713354/99‑1 (MQ=255)

                                                                                          gaGCGAATGTAATGACTGACTAAGCATGGAGTACCGGGGATGTAGGAATTTCGGACGGTGGTTCAACTGCCGCGAGGTCCACCAAAATTCTCCATCGGt          >  2:1409390/2‑99 (MQ=255)

                                                                                                  gTAAAGACTGACGAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCGCCACCAAAATTCTCCATCGGTGATTACCa  <  2:2215251/99‑1 (MQ=255)

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`