New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1070548 =	140 (0.980)	7 (0.050)	7/318	6.8	5.1%	coding (408/591 nt)	rutE	putative malonic semialdehyde reductase
	?	NC_000913	1070576 =	127 (0.930)					coding (380/591 nt)	rutE	putative malonic semialdehyde reductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1070785‑1070548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAAC  >  NC_000913/1070576‑1070810                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCA                                                                                                                                                                                                                                            <  1:631977/239‑1                                                                          CCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGc                                                                                                                                                                                                                              >  2:445282/1‑179                                                                          CCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGA                                                                                                                                                                                                                              <  1:445282/180‑1                                                                                            GCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCT                                                                                                                                                                                                 >  1:1502975/1‑191                                                                                            GCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCT                                                                                                                                                                                                 <  2:1502975/191‑1                                                                                                                               ACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTG                                                                                                                                                                                                <  1:1400279/157‑1                                                                                                                               ACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTG                                                                                                                                                                                                >  2:1400279/1‑157                                                                                                                                                                                                                                       ccgaCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACTGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGTGGTCTGGGACTTTTGCAGCGTGCCGCTGGAAAGGGCa                                                            >  2:502022/5‑184                                                                                                                                                                                                                                        CGCCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAG     >  1:884590/1‑239                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAGACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTG                              <  2:2032895/212‑1                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAGACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTG                              >  1:2032895/1‑212                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGTGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGAT                >  1:779851/1‑226                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGGCGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGCACCTGGCCGGAGA    >  2:1533391/1‑238                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGA    >  1:1934861/1‑238                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGAT                <  2:779851/226‑1                                                                                                                                                                                                                                          CCTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGGGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGA    >  1:1421618/1‑238                                                                                                                                                                                                                                           CTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAAC  >  1:2005117/1‑239                                                                                                                                                                                                                                           CTGCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAA   <  1:1021110/238‑1                                                                                                                                                                                                                                             GCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCAC                                                                                                                                                                       >  1:2046005/1‑72                                                                                                                                                                                                                                             GCATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGGGGGCTGGAGGTAAACCAACTGCGGGCATCAC                                                                                                                                                                       <  2:2046005/72‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCACGGCAGAAGGAAAAGAACGTCTGCGCCCGGCACTTTCCAGCGGCAATCTGCAAAAAACCCTGACCGCGCCCGTCACCGCTATCGTCGCCTGGGACAGTGAATTTTATGAACGGTTACCACTACTGTTTCCCCACGGTGATGCCCGCAGTTGGTTTACCTCCAGCCCACAACTTGCCGAAGAAACAGCGTTTCGCAACAGTTCCATGCAGGCGGCCTATCTGATCGTCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1070785‑1070548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcATGGAACTGTTGCGAAACGCTGTTTCTTCGGCAAGTTGTGGGCTGGAGGTAAACCAACTGCGGGCATCACCGTGGGGAAACAGTAGTGGTAACCGTTCATAAAATTCACTGTCCCAGGCGACGATAGCGGTGACGGGCGCGGTCAGGGTTTTTTGCAGATTGCCGCTGGAAAGTGCCGGGCGCAGACGTTCTTTTCCTTCTGCCGTGCGGGTAAACACGATCCGTGCCGGAGAAC  >  NC_000913/1070576‑1070810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.