| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1757687 | 214 (1.490) | 5 (0.040) | 5/304 | 7.4 | 2.4% | intergenic (+30/+34) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| ? | NC_000913 | = 1757688 | 212 (1.620) | intergenic (+31/+33) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1757439‑1757687‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggcgcacaATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCA < NC_000913/1757688‑1757470 GTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAA > 1:942551/1‑239GTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAA > 1:631997/1‑239 GGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGACGTGACAAATGGC > 2:1382253/1‑238 GGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGC > 1:886757/1‑238 CGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGC < 2:1843013/238‑1 CGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGC > 1:1966101/1‑238 CGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGC > 1:2033195/1‑238 CGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCGACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACA > 1:1489473/1‑239 CGGTAATCCTGGGTTCTACTCTGCTGGCAGGTGGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCACACTGCTAAAGATGACGCAGCTCGAGCTAACCAGCGCCTGGACAAAATGGCTACTAAATACCGCAAGTAATCGTACCTGCGGAGTGAAAAATGGCGCACc > 2:998322/1‑238 CGGTAATCCTGGGTTCTACTCTGCTGGCAGGCTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGCCGTTCAGACTCTGAACGCTAAAGTTGACCAGCGGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCGAAAGATGAGCCAGCTCGTGCTAACCAGCGACTGCACAACATGGCTACTAAATTACGAAAGTCATAGTACCTGGGAAGTGAAAAATGAAGCACc > 2:366970/1‑238 GGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGGTGACCAGCTTAGCAACGCCGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCCCGGGCTAACCAGCGTCTTGACAACATGGCAACTAAATACCGCAAGACATAGTACCAGTGACATGAAAAAAGGCGCACca > 2:2095351/1‑237 TTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGAACAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAAGCTGCTAAAGATGACGCAGCCCTTGCTAACCCGCGACTGGACCACATGGCTACTACAAAACGCTAGTAATAGCACCTGTGAAGTGACAACTGTCGACCAATGTGCGCacatt > 2:1129671/1‑234 AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGG < 2:558397/150‑1 AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGG > 1:558397/1‑150 TAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGCATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTC > 1:1809001/1‑239 CGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGC > 2:1240324/1‑82 CGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGC < 1:1240324/82‑1 ACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGA > 1:635703/1‑238 TACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAA < 1:66961/37‑1 CGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCA > 2:66961/1‑37 CAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAA > 1:862196/1‑205 CAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAA < 2:862196/205‑1 AAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCA < 1:598997/233‑1 TGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCT > 1:691729/1‑78 TGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCT < 2:691729/78‑1 GTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1757439‑1757687‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggcgcacaATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCA < NC_000913/1757688‑1757470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |