New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 225456 =72 (0.500)12 (0.090) 11/314 5.5 15.0% noncoding (76/77 nt) ileV tRNA‑Ile
?NC_000913 = 3427056 NA (NA)intergenic (‑23/+20) alaU/ileU tRNA‑Ala/tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTT  >  NC_000913/3426840‑3427271
                                                                                                                                                                                                                        |                                                                                                                                                                                                                       
aattttCGTGGTTCAGTGTGTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATTACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTgg                                                                                                                                                                                                   <  2:1690078/236‑1 (MQ=0)
                                  gaaccAGATTTTTAAAGAGCAAAACTTCGCAGTGAATCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCTCTACAGAGATGGTGGATCTATGCGGGATCGAACCGCAGTCCTCCTGCGTTCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCAcc                                                                                                                                                                 <  2:1806070/236‑1 (MQ=0)
                                                                                                             cttcAGGGATGGTGGATCTATCCGGGATCGAACCACTGACCTCCGGCGTGCAAACCCGGCGCTCTCCCAGCTGGGCTATAGCCCCATATCATGTAGTAAAAACCTCTTCAAATTTCCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGACCCACCGCCCTCACCCTTATCAGGGGTGCGCACTAACCCCCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATc                                                                                      <  2:861376/236‑1 (MQ=1)
                                                                                                                                                                           tcgcccAGCTGCGCTATAGCCCCATAACATGTAGTTAAACCCTCTCAAAATTTGCCTGGCAAATTTGGCGGCCCTTAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc                         <  2:907933/235‑1 (MQ=1)
                                                                                                                                                                                                 cataactgttAGTTAAAACCCTGTCAAATTTGCCTTGCAAATTTGTTCGGCCTGAGTGAACTTGACCCCCCGCCCTCACCCTGATCAGGGTTGCGCTCTAACCACCGGGGCTACAGGCCTGTAGAGGTTTTACAGCTCATTTTCATCAGACAATCTGGGTGAGCACTGCTAAGTACGCTTATTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACtt  <  2:1741144/230‑1 (MQ=1)
                                                                                                                                                                                                                        |                                                                                                                                                                                                                       
AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTT  >  NC_000913/3426840‑3427271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.