| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3775999 = | 535 (2.970) | 14 (0.080) | 11/292 | 21.7 | 2.6% | coding (429/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | 3776026 = | 512 (2.840) | coding (456/588 nt) | mtlR | mannitol operon repressor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTAAGCTGATTTTGGAAATCAGCTCAGTCAGTGAAAGGACCATTGTTGATCGCACAGCCTGTTGATAGCGCTGAATTTGCATTGCATACAAACTGGAGTCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3776140‑3775999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTAAG > NC_000913/3776026‑3776159 TTTCAAGCTGATTTTGGAAATCAGCTCAGTCAGTGAAAGGACCATTGTTGATCGCACAGCCTGTTGATAGCGCTGAATTTGCATTGCATACAAACTGGAGTCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACAGTTTGAA < 2:2762442/149‑1 TGCATACAAACTGGAGTCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACGGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAG > 1:1728340/1‑149 TCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACGGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTT < 1:2242519/121‑1 TCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACGGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTT > 2:2242519/1‑121 TTCAAACTGTGGCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGAGTTCCAAAATCAGCTTCAAA > 1:924672/1‑149 ACTGTGGCGGCGGTGGTAACACTGCAAAAGTTTGAACCAGGAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTCACAGAGCGGAGGTCCAAAATCAGCTTAAAAAAAGC > 2:2886349/1‑149 TGTGGCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGCCTGAGCTGATTTCCAACATCAGCTTAAAAAAAGCCT > 2:1238059/1‑149 TGTGGCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGAAAATTCAGCGCTATCAACAGGATGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCT > 2:2519423/1‑149 GTGGCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAACTCAGCGTAAAAAAACCCTT > 1:870461/1‑149 GCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCGATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACCATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAACAAAAGCCTTTCA > 2:1628224/1‑149 GCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCCTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCT < 1:47182/145‑1 GCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCCTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCT > 2:47182/1‑145 GCGGCGGTGGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGACCTGCAGATACAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCA > 2:649495/1‑149 GGTAACGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTAAG > 2:1533450/1‑149 TTTTAAGCTGATTTTGGAAATCAGCTCAGTCAGTGAAAGGACCATTGTTGATCGCACAGCCTGTTGATAGCGCTGAATTTGCATTGCATACAAACTGGAGTCTGCTGGTTCAAACTGTGGCGGCGGTGGTAACGCCGCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3776140‑3775999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTAAG > NC_000913/3776026‑3776159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |